Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3346

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
3,510,839	+		Psest_3345	0.45	-0.2
3,511,093	+		Psest_3345	0.61	+1.5
3,511,094	-		Psest_3345	0.62	+1.0
3,511,191	-		Psest_3345	0.68	+0.1
3,511,489	+		Psest_3345	0.87	-0.6
3,511,489	+		Psest_3345	0.87	-2.9
3,511,489	+		Psest_3345	0.87	+1.2
3,511,490	-		Psest_3345	0.87	-0.0
3,511,490	-		Psest_3345	0.87	+1.4
3,511,490	-		Psest_3345	0.87	+2.0
3,511,490	-		Psest_3345	0.87	+0.1
3,511,526	+		Psest_3345	0.90	-0.0
3,511,526	+		Psest_3345	0.90	+0.8
3,511,526	+		Psest_3345	0.90	+1.1
3,511,526	+		Psest_3345	0.90	+1.0
3,511,526	+		Psest_3345	0.90	+0.7
3,511,526	+		Psest_3345	0.90	+3.0
3,511,526	+		Psest_3345	0.90	-0.2
3,511,526	+		Psest_3345	0.90	+0.9
3,511,526	+		Psest_3345	0.90	+0.6
3,511,527	-		Psest_3345	0.90	+1.4
3,511,527	-		Psest_3345	0.90	+0.1
3,511,558	+				-2.3
3,511,558	+				-1.7
3,511,558	+				+1.1
3,511,558	+				+0.5
3,511,558	+				-2.0
3,511,559	-				+0.8
3,511,559	-				-2.0
3,511,559	-				+0.6
3,511,559	-				+2.1
3,511,559	-				+4.8
3,511,559	-				+0.6
3,511,559	-				+2.0
3,511,559	-				+1.4
3,511,559	-				+1.5
3,511,604	+				-1.4
3,511,604	+				-0.9
3,511,676	-				+1.4
3,511,676	-				+3.3
3,511,676	-				+1.7
3,511,709	+				-0.8
3,511,797	-				+1.0
3,511,833	-				+2.0
3,511,833	-				+2.0
3,511,833	-				+2.0
3,511,902	+				-1.5
3,511,902	+				+0.5
3,511,905	+				-3.2
3,511,906	-				+1.7
3,511,906	-				+1.7
3,511,966	-				+1.0
3,511,969	-				+0.3
3,512,028	+				+0.4
3,512,028	+				+0.7
3,512,028	+				+0.4
3,512,029	-				+1.0
3,512,029	-				+0.5
3,512,293	+		Psest_3346	0.23	-0.2
3,512,294	-		Psest_3346	0.23	+1.0
3,512,457	+		Psest_3346	0.31	+0.0
3,512,457	+		Psest_3346	0.31	-0.0
3,512,457	+		Psest_3346	0.31	+2.4
3,512,457	+		Psest_3346	0.31	-2.4
3,512,457	+		Psest_3346	0.31	-0.3
3,512,457	+		Psest_3346	0.31	+0.6
3,512,458	-		Psest_3346	0.31	+2.2
3,512,478	+		Psest_3346	0.32	+0.4
3,512,505	+		Psest_3346	0.33	+0.1
3,512,588	+		Psest_3346	0.37	+0.1
3,512,589	-		Psest_3346	0.37	-0.0
3,512,678	-		Psest_3346	0.41	-0.4
3,512,715	+		Psest_3346	0.43	-0.1
3,512,715	+		Psest_3346	0.43	-0.9
3,512,715	+		Psest_3346	0.43	-0.2
3,512,717	+		Psest_3346	0.43	-1.0
3,512,718	-		Psest_3346	0.43	-0.2
3,512,828	+		Psest_3346	0.48	-1.2
3,512,829	-		Psest_3346	0.49	-1.6
3,512,932	-		Psest_3346	0.53	-1.0
3,512,991	+		Psest_3346	0.56	-0.3
3,513,097	-		Psest_3346	0.61	-1.7
3,513,209	+		Psest_3346	0.67	+1.0
3,513,210	-		Psest_3346	0.67	-0.3
3,513,210	-		Psest_3346	0.67	+0.0
3,513,210	-		Psest_3346	0.67	-0.7
3,513,393	+		Psest_3346	0.76	-1.4
3,513,393	+		Psest_3346	0.76	-0.0
3,513,394	-		Psest_3346	0.76	-0.4
3,513,394	-		Psest_3346	0.76	-3.0
3,513,503	+		Psest_3346	0.81	-0.5
3,513,503	+		Psest_3346	0.81	-0.2
3,513,503	+		Psest_3346	0.81	-1.2
3,513,504	-		Psest_3346	0.81	-1.4
3,513,504	-		Psest_3346	0.81	-0.0
3,513,523	+		Psest_3346	0.82	-2.0
3,513,523	+		Psest_3346	0.82	-2.7
3,513,523	+		Psest_3346	0.82	-0.6
3,513,523	+		Psest_3346	0.82	+0.8
3,513,523	+		Psest_3346	0.82	-1.0
3,513,523	+		Psest_3346	0.82	-1.5
3,513,524	-		Psest_3346	0.82	-0.6
3,513,524	-		Psest_3346	0.82	+0.5
3,513,524	-		Psest_3346	0.82	+0.4
3,513,524	-		Psest_3346	0.82	+0.6
3,513,524	-		Psest_3346	0.82	+1.5
3,513,525	+		Psest_3346	0.82	-0.5
3,513,525	+		Psest_3346	0.82	+2.7
3,513,525	+		Psest_3346	0.82	-2.0
3,513,525	+		Psest_3346	0.82	-0.6
3,513,525	+		Psest_3346	0.82	-0.9
3,513,525	+		Psest_3346	0.82	-1.6
3,513,525	+		Psest_3346	0.82	+0.4
3,513,525	+		Psest_3346	0.82	-0.5
3,513,526	-		Psest_3346	0.82	-2.1
3,513,526	-		Psest_3346	0.82	+0.1
3,513,526	-		Psest_3346	0.82	-0.0
3,513,526	-		Psest_3346	0.82	-2.0
3,513,526	-		Psest_3346	0.82	-2.0
3,513,527	+		Psest_3346	0.82	-0.6
3,513,527	+		Psest_3346	0.82	-1.9
3,513,528	-		Psest_3346	0.82	+0.1
3,513,528	-		Psest_3346	0.82	-1.5
3,513,528	-		Psest_3346	0.82	+0.4
3,513,528	-		Psest_3346	0.82	+1.0
3,513,528	-		Psest_3346	0.82	-2.2
3,513,528	-		Psest_3346	0.82	-1.0
3,513,528	-		Psest_3346	0.82	+0.1
3,513,528	-		Psest_3346	0.82	+0.4
3,513,528	-		Psest_3346	0.82	+0.1
3,513,528	-		Psest_3346	0.82	-1.6
3,513,528	-		Psest_3346	0.82	-2.2
3,513,528	-		Psest_3346	0.82	+1.0
3,513,528	-		Psest_3346	0.82	+0.6
3,513,528	-		Psest_3346	0.82	+0.6
3,513,528	-		Psest_3346	0.82	-1.1
3,513,540	+		Psest_3346	0.83	-0.2
3,513,540	+		Psest_3346	0.83	+1.0
3,513,540	+		Psest_3346	0.83	-1.5
3,513,541	-		Psest_3346	0.83	-1.0
3,513,541	-		Psest_3346	0.83	-0.7
3,513,590	-		Psest_3346	0.85	+0.4
3,513,590	-		Psest_3346	0.85	+0.1
3,513,600	-		Psest_3346	0.86	+1.7
3,513,655	-		Psest_3346	0.88	-1.0
3,513,786	+				-0.4
3,514,019	-				+0.2
3,514,027	+				-0.6
3,514,027	+				+0.1
3,514,027	+				+0.4
3,514,027	+				-0.9
3,514,114	+				-0.6
3,514,115	-				+0.7
3,514,250	+				-1.0
3,514,250	+				-0.8
3,514,251	-				+1.0
3,514,265	+				-1.6
3,514,265	+				-2.0
3,514,265	+				-1.4
3,514,352	+				+1.6
3,514,352	+				-2.6
3,514,353	-				-0.0
3,514,403	+				+1.4
3,514,403	+				+1.0
3,514,403	+				-1.0
3,514,403	+				+0.3
3,514,403	+				-2.6
3,514,403	+				+1.5
3,514,404	-				+0.2
3,514,404	-				+1.4
3,514,404	-				+0.5
3,514,404	-				-1.0
3,514,404	-				+1.1
3,514,404	-				+1.3
3,514,404	-				+1.8
3,514,404	-				-0.5
3,514,404	-				+0.3
3,514,404	-				+1.0
3,514,445	+		Psest_3347	0.12	+0.3
3,514,445	+		Psest_3347	0.12	+0.4
3,514,445	+		Psest_3347	0.12	+2.0
3,514,445	+		Psest_3347	0.12	-0.4
3,514,445	+		Psest_3347	0.12	+0.1
3,514,445	+		Psest_3347	0.12	-0.3
3,514,445	+		Psest_3347	0.12	-0.6
3,514,445	+		Psest_3347	0.12	-1.6
3,514,445	+		Psest_3347	0.12	-0.2
3,514,445	+		Psest_3347	0.12	+0.7
3,514,445	+		Psest_3347	0.12	+0.9
3,514,445	+		Psest_3347	0.12	+0.3
3,514,446	-		Psest_3347	0.12	+2.0
3,514,446	-		Psest_3347	0.12	-1.4
3,514,446	-		Psest_3347	0.12	+0.2
3,514,446	-		Psest_3347	0.12	+1.4
3,514,446	-		Psest_3347	0.12	-0.9
3,514,446	-		Psest_3347	0.12	+0.6
3,514,446	-		Psest_3347	0.12	-0.4
3,514,446	-		Psest_3347	0.12	+2.0
3,514,446	-		Psest_3347	0.12	+1.0
3,514,446	-		Psest_3347	0.12	+1.4
3,514,502	+		Psest_3347	0.14	+1.1
3,514,503	-		Psest_3347	0.14	+0.9
3,514,503	-		Psest_3347	0.14	+1.0
3,514,503	-		Psest_3347	0.14	+0.5
3,514,517	+		Psest_3347	0.15	+0.8
3,514,517	+		Psest_3347	0.15	+0.4
3,514,517	+		Psest_3347	0.15	-2.0
3,514,518	-		Psest_3347	0.15	+3.2
3,514,580	+		Psest_3347	0.18	-0.0
3,514,580	+		Psest_3347	0.18	-0.3
3,514,580	+		Psest_3347	0.18	+1.1
3,514,581	-		Psest_3347	0.18	+1.0
3,514,581	-		Psest_3347	0.18	+0.2
3,514,581	-		Psest_3347	0.18	+0.2
3,514,581	-		Psest_3347	0.18	-0.3
3,514,586	+		Psest_3347	0.18	-0.0
3,514,586	+		Psest_3347	0.18	-0.9
3,514,586	+		Psest_3347	0.18	+0.4
3,514,586	+		Psest_3347	0.18	-0.3
3,514,587	-		Psest_3347	0.18	+0.3
3,514,587	-		Psest_3347	0.18	+0.1
3,514,587	-		Psest_3347	0.18	+0.4
3,514,781	+		Psest_3347	0.26	+0.4
3,514,781	+		Psest_3347	0.26	+0.4
3,514,781	+		Psest_3347	0.26	-0.6
3,514,781	+		Psest_3347	0.26	+0.8
3,514,781	+		Psest_3347	0.26	-0.4
3,514,785	+		Psest_3347	0.27	+0.4
3,514,786	-		Psest_3347	0.27	-2.5
3,514,889	+		Psest_3347	0.31	+0.6
3,514,890	-		Psest_3347	0.31	-0.4