Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3042 and HP15_3043 are separated by 99 nucleotides HP15_3043 and HP15_3044 are separated by 162 nucleotides
HP15_3042: HP15_3042 - acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) , at 3,188,964 to 3,190,178
_3042
HP15_3043: HP15_3043 - DNA polymerase III, epsilon subunit, at 3,190,278 to 3,191,738
_3043
HP15_3044: HP15_3044 - conserved hypothetical protein, secreted, at 3,191,901 to 3,193,034
_3044
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3189.312 kb on - strand, within HP15_3042 at 3189.350 kb on + strand, within HP15_3042 at 3189.370 kb on - strand, within HP15_3042 at 3189.463 kb on + strand, within HP15_3042 at 3189.463 kb on + strand, within HP15_3042 at 3189.471 kb on - strand, within HP15_3042 at 3189.518 kb on - strand, within HP15_3042 at 3189.583 kb on - strand, within HP15_3042 at 3189.583 kb on - strand, within HP15_3042 at 3189.586 kb on + strand, within HP15_3042 at 3189.596 kb on + strand, within HP15_3042 at 3189.902 kb on - strand, within HP15_3042 at 3190.023 kb on + strand, within HP15_3042 at 3190.023 kb on + strand, within HP15_3042 at 3190.264 kb on - strand at 3190.389 kb on + strand at 3190.543 kb on - strand, within HP15_3043 at 3190.630 kb on + strand, within HP15_3043 at 3190.630 kb on + strand, within HP15_3043 at 3190.638 kb on - strand, within HP15_3043 at 3190.640 kb on + strand, within HP15_3043 at 3190.829 kb on - strand, within HP15_3043 at 3190.887 kb on + strand, within HP15_3043 at 3190.914 kb on - strand, within HP15_3043 at 3190.924 kb on - strand, within HP15_3043 at 3190.964 kb on + strand, within HP15_3043 at 3190.972 kb on - strand, within HP15_3043 at 3190.991 kb on + strand, within HP15_3043 at 3190.991 kb on + strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3191.008 kb on + strand, within HP15_3043 at 3191.010 kb on + strand, within HP15_3043 at 3191.018 kb on - strand, within HP15_3043 at 3191.045 kb on + strand, within HP15_3043 at 3191.116 kb on - strand, within HP15_3043 at 3191.116 kb on - strand, within HP15_3043 at 3191.124 kb on - strand, within HP15_3043 at 3191.134 kb on + strand, within HP15_3043 at 3191.293 kb on + strand, within HP15_3043 at 3191.360 kb on + strand, within HP15_3043 at 3191.466 kb on + strand, within HP15_3043 at 3191.467 kb on + strand, within HP15_3043 at 3191.475 kb on - strand, within HP15_3043 at 3191.475 kb on - strand, within HP15_3043 at 3191.623 kb on + strand at 3191.679 kb on + strand at 3191.988 kb on - strand at 3191.990 kb on + strand at 3191.998 kb on - strand at 3192.024 kb on + strand, within HP15_3044 at 3192.041 kb on - strand, within HP15_3044 at 3192.041 kb on - strand, within HP15_3044 at 3192.327 kb on + strand, within HP15_3044 at 3192.469 kb on + strand, within HP15_3044 at 3192.470 kb on - strand, within HP15_3044 at 3192.477 kb on - strand, within HP15_3044 at 3192.477 kb on - strand, within HP15_3044 at 3192.477 kb on - strand, within HP15_3044 at 3192.478 kb on - strand, within HP15_3044 at 3192.518 kb on + strand, within HP15_3044 at 3192.605 kb on - strand, within HP15_3044 at 3192.661 kb on - strand, within HP15_3044
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,189,312 - HP15_3042 0.29 -1.2 3,189,350 + HP15_3042 0.32 +0.1 3,189,370 - HP15_3042 0.33 -1.9 3,189,463 + HP15_3042 0.41 -1.1 3,189,463 + HP15_3042 0.41 +2.1 3,189,471 - HP15_3042 0.42 +0.4 3,189,518 - HP15_3042 0.46 +0.4 3,189,583 - HP15_3042 0.51 -2.2 3,189,583 - HP15_3042 0.51 +0.4 3,189,586 + HP15_3042 0.51 -0.2 3,189,596 + HP15_3042 0.52 -1.2 3,189,902 - HP15_3042 0.77 -1.6 3,190,023 + HP15_3042 0.87 +0.3 3,190,023 + HP15_3042 0.87 -0.9 3,190,264 - -1.2 3,190,389 + +1.4 3,190,543 - HP15_3043 0.18 +1.4 3,190,630 + HP15_3043 0.24 +2.6 3,190,630 + HP15_3043 0.24 +0.5 3,190,638 - HP15_3043 0.25 -0.2 3,190,640 + HP15_3043 0.25 +0.8 3,190,829 - HP15_3043 0.38 -0.6 3,190,887 + HP15_3043 0.42 +0.9 3,190,914 - HP15_3043 0.44 +0.7 3,190,924 - HP15_3043 0.44 +0.2 3,190,964 + HP15_3043 0.47 -0.5 3,190,972 - HP15_3043 0.48 -1.0 3,190,991 + HP15_3043 0.49 -2.6 3,190,991 + HP15_3043 0.49 -0.1 3,190,999 - HP15_3043 0.49 -1.8 3,190,999 - HP15_3043 0.49 +1.4 3,190,999 - HP15_3043 0.49 +0.8 3,190,999 - HP15_3043 0.49 +1.6 3,190,999 - HP15_3043 0.49 -1.2 3,191,008 + HP15_3043 0.50 +0.7 3,191,010 + HP15_3043 0.50 +0.4 3,191,018 - HP15_3043 0.51 +0.3 3,191,045 + HP15_3043 0.52 +1.3 3,191,116 - HP15_3043 0.57 -1.1 3,191,116 - HP15_3043 0.57 +2.2 3,191,124 - HP15_3043 0.58 +1.7 3,191,134 + HP15_3043 0.59 +0.2 3,191,293 + HP15_3043 0.69 -1.2 3,191,360 + HP15_3043 0.74 +1.6 3,191,466 + HP15_3043 0.81 +0.2 3,191,467 + HP15_3043 0.81 -0.6 3,191,475 - HP15_3043 0.82 -0.6 3,191,475 - HP15_3043 0.82 -1.1 3,191,623 + +0.9 3,191,679 + +0.6 3,191,988 - -0.2 3,191,990 + +1.4 3,191,998 - -3.7 3,192,024 + HP15_3044 0.11 -0.1 3,192,041 - HP15_3044 0.12 -0.4 3,192,041 - HP15_3044 0.12 -0.1 3,192,327 + HP15_3044 0.38 -2.6 3,192,469 + HP15_3044 0.50 +1.4 3,192,470 - HP15_3044 0.50 -0.8 3,192,477 - HP15_3044 0.51 -2.2 3,192,477 - HP15_3044 0.51 +1.6 3,192,477 - HP15_3044 0.51 +0.1 3,192,478 - HP15_3044 0.51 +3.2 3,192,518 + HP15_3044 0.54 +0.5 3,192,605 - HP15_3044 0.62 -0.9 3,192,661 - HP15_3044 0.67 -0.7
Or see this region's nucleotide sequence