Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2991 and HP15_2992 are separated by 36 nucleotides HP15_2992 and HP15_2993 are separated by 113 nucleotides HP15_2993 and HP15_2994 are separated by 175 nucleotides
HP15_2991: HP15_2991 - lipoprotein, at 3,133,856 to 3,135,061
_2991
HP15_2992: HP15_2992 - secreted protein containing DUF400, at 3,135,098 to 3,135,646
_2992
HP15_2993: HP15_2993 - conjugative transfer protein, at 3,135,760 to 3,137,196
_2993
HP15_2994: HP15_2994 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase, at 3,137,372 to 3,138,493
_2994
Position (kb)
3135
3136
3137
3138 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3134.780 kb on - strand, within HP15_2991 at 3134.891 kb on - strand, within HP15_2991 at 3134.895 kb on + strand, within HP15_2991 at 3134.903 kb on + strand, within HP15_2991 at 3134.954 kb on + strand at 3134.972 kb on + strand at 3135.028 kb on - strand at 3135.039 kb on + strand at 3135.073 kb on + strand at 3135.082 kb on - strand at 3135.095 kb on + strand at 3135.105 kb on + strand at 3135.119 kb on + strand at 3135.131 kb on + strand at 3135.134 kb on - strand at 3135.392 kb on + strand, within HP15_2992 at 3135.398 kb on + strand, within HP15_2992 at 3135.449 kb on + strand, within HP15_2992 at 3135.476 kb on + strand, within HP15_2992 at 3135.522 kb on - strand, within HP15_2992 at 3135.579 kb on + strand, within HP15_2992 at 3135.809 kb on - strand at 3135.825 kb on + strand at 3135.825 kb on + strand at 3135.825 kb on + strand at 3135.825 kb on + strand at 3135.833 kb on - strand at 3135.833 kb on - strand at 3135.839 kb on - strand at 3135.840 kb on - strand at 3135.845 kb on - strand at 3135.953 kb on + strand, within HP15_2993 at 3135.953 kb on + strand, within HP15_2993 at 3135.958 kb on + strand, within HP15_2993 at 3135.963 kb on + strand, within HP15_2993 at 3136.045 kb on + strand, within HP15_2993 at 3136.116 kb on - strand, within HP15_2993 at 3136.328 kb on + strand, within HP15_2993 at 3136.334 kb on - strand, within HP15_2993 at 3136.475 kb on + strand, within HP15_2993 at 3136.506 kb on + strand, within HP15_2993 at 3136.630 kb on + strand, within HP15_2993 at 3136.698 kb on + strand, within HP15_2993 at 3136.741 kb on + strand, within HP15_2993 at 3136.741 kb on + strand, within HP15_2993 at 3136.741 kb on + strand, within HP15_2993 at 3136.749 kb on - strand, within HP15_2993 at 3136.749 kb on - strand, within HP15_2993 at 3136.799 kb on + strand, within HP15_2993 at 3136.856 kb on + strand, within HP15_2993 at 3136.856 kb on + strand, within HP15_2993 at 3136.864 kb on - strand, within HP15_2993 at 3136.874 kb on + strand, within HP15_2993 at 3136.962 kb on + strand, within HP15_2993 at 3137.040 kb on + strand, within HP15_2993 at 3137.140 kb on + strand at 3137.148 kb on - strand at 3137.151 kb on - strand at 3137.171 kb on + strand at 3137.178 kb on + strand at 3137.233 kb on - strand at 3137.251 kb on - strand at 3137.253 kb on + strand at 3137.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,134,780 - HP15_2991 0.77 -2.7 3,134,891 - HP15_2991 0.86 -1.2 3,134,895 + HP15_2991 0.86 -0.2 3,134,903 + HP15_2991 0.87 +0.1 3,134,954 + -2.1 3,134,972 + +0.1 3,135,028 - -0.6 3,135,039 + +0.4 3,135,073 + +0.2 3,135,082 - +0.6 3,135,095 + -0.6 3,135,105 + +0.2 3,135,119 + -1.9 3,135,131 + +1.4 3,135,134 - -0.9 3,135,392 + HP15_2992 0.54 +0.3 3,135,398 + HP15_2992 0.55 +0.4 3,135,449 + HP15_2992 0.64 -2.4 3,135,476 + HP15_2992 0.69 -0.9 3,135,522 - HP15_2992 0.77 +0.0 3,135,579 + HP15_2992 0.88 +0.2 3,135,809 - +1.7 3,135,825 + -0.0 3,135,825 + +0.1 3,135,825 + -1.4 3,135,825 + -1.2 3,135,833 - -0.2 3,135,833 - -0.0 3,135,839 - -2.1 3,135,840 - +0.9 3,135,845 - -0.1 3,135,953 + HP15_2993 0.13 -0.6 3,135,953 + HP15_2993 0.13 +0.5 3,135,958 + HP15_2993 0.14 +0.1 3,135,963 + HP15_2993 0.14 -0.7 3,136,045 + HP15_2993 0.20 -0.6 3,136,116 - HP15_2993 0.25 -0.7 3,136,328 + HP15_2993 0.40 -0.5 3,136,334 - HP15_2993 0.40 -1.6 3,136,475 + HP15_2993 0.50 -3.0 3,136,506 + HP15_2993 0.52 +1.1 3,136,630 + HP15_2993 0.61 +0.8 3,136,698 + HP15_2993 0.65 +1.5 3,136,741 + HP15_2993 0.68 -1.1 3,136,741 + HP15_2993 0.68 +0.1 3,136,741 + HP15_2993 0.68 +0.4 3,136,749 - HP15_2993 0.69 +0.9 3,136,749 - HP15_2993 0.69 +0.4 3,136,799 + HP15_2993 0.72 +1.5 3,136,856 + HP15_2993 0.76 +1.3 3,136,856 + HP15_2993 0.76 +0.4 3,136,864 - HP15_2993 0.77 -0.4 3,136,874 + HP15_2993 0.78 -0.1 3,136,962 + HP15_2993 0.84 -1.2 3,137,040 + HP15_2993 0.89 -1.0 3,137,140 + +0.4 3,137,148 - +0.3 3,137,151 - -1.2 3,137,171 + -0.1 3,137,178 + +2.4 3,137,233 - -0.3 3,137,251 - -1.4 3,137,253 + +1.2 3,137,350 + +2.0
Or see this region's nucleotide sequence