Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2981 and HP15_2982 are separated by 6 nucleotides HP15_2982 and HP15_2983 are separated by 86 nucleotides
HP15_2981: HP15_2981 - 3-oxoacyl-(acyl-carrier-protein) synthase I, at 3,123,898 to 3,125,109
_2981
HP15_2982: HP15_2982 - protein containing Helix-turn-helix, AraC domain, at 3,125,116 to 3,125,472
_2982
HP15_2983: HP15_2983 - peptidase, U32 family, at 3,125,559 to 3,126,956
_2983
Position (kb)
3125
3126 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3124.142 kb on - strand, within HP15_2981 at 3124.173 kb on + strand, within HP15_2981 at 3124.377 kb on - strand, within HP15_2981 at 3124.738 kb on - strand, within HP15_2981 at 3124.790 kb on + strand, within HP15_2981 at 3125.077 kb on + strand at 3125.126 kb on - strand at 3125.132 kb on - strand at 3125.240 kb on - strand, within HP15_2982 at 3125.254 kb on + strand, within HP15_2982 at 3125.333 kb on + strand, within HP15_2982 at 3125.394 kb on + strand, within HP15_2982 at 3125.399 kb on + strand, within HP15_2982 at 3125.404 kb on + strand, within HP15_2982 at 3125.445 kb on + strand at 3125.471 kb on + strand at 3125.588 kb on - strand at 3125.628 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.665 kb on + strand at 3125.673 kb on - strand at 3125.675 kb on + strand at 3125.683 kb on - strand at 3125.683 kb on - strand at 3125.683 kb on - strand at 3125.685 kb on + strand at 3125.713 kb on + strand, within HP15_2983 at 3125.816 kb on + strand, within HP15_2983 at 3125.824 kb on - strand, within HP15_2983 at 3125.824 kb on - strand, within HP15_2983 at 3125.860 kb on + strand, within HP15_2983 at 3125.990 kb on - strand, within HP15_2983 at 3126.018 kb on - strand, within HP15_2983 at 3126.148 kb on - strand, within HP15_2983 at 3126.148 kb on - strand, within HP15_2983 at 3126.250 kb on - strand, within HP15_2983 at 3126.253 kb on + strand, within HP15_2983 at 3126.261 kb on - strand, within HP15_2983 at 3126.261 kb on - strand, within HP15_2983 at 3126.308 kb on - strand, within HP15_2983 at 3126.375 kb on + strand, within HP15_2983
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,124,142 - HP15_2981 0.20 -0.6 3,124,173 + HP15_2981 0.23 -1.1 3,124,377 - HP15_2981 0.40 -1.4 3,124,738 - HP15_2981 0.69 +1.6 3,124,790 + HP15_2981 0.74 -2.7 3,125,077 + -3.1 3,125,126 - +0.4 3,125,132 - +1.1 3,125,240 - HP15_2982 0.35 +0.2 3,125,254 + HP15_2982 0.39 +3.2 3,125,333 + HP15_2982 0.61 +1.4 3,125,394 + HP15_2982 0.78 -1.4 3,125,399 + HP15_2982 0.79 +0.8 3,125,404 + HP15_2982 0.81 -0.8 3,125,445 + +1.7 3,125,471 + +0.4 3,125,588 - -0.1 3,125,628 + +0.5 3,125,638 + -0.5 3,125,638 + +1.5 3,125,638 + -1.4 3,125,638 + -0.5 3,125,638 + +0.4 3,125,638 + -2.8 3,125,638 + -2.8 3,125,646 - -0.6 3,125,646 - -0.5 3,125,646 - -0.1 3,125,646 - +0.2 3,125,646 - -1.9 3,125,665 + +0.3 3,125,673 - -0.6 3,125,675 + -1.4 3,125,683 - -0.2 3,125,683 - -0.1 3,125,683 - -0.6 3,125,685 + -0.9 3,125,713 + HP15_2983 0.11 +1.9 3,125,816 + HP15_2983 0.18 -2.2 3,125,824 - HP15_2983 0.19 -0.0 3,125,824 - HP15_2983 0.19 +2.4 3,125,860 + HP15_2983 0.22 +0.0 3,125,990 - HP15_2983 0.31 -0.6 3,126,018 - HP15_2983 0.33 +1.4 3,126,148 - HP15_2983 0.42 -0.6 3,126,148 - HP15_2983 0.42 -1.1 3,126,250 - HP15_2983 0.49 -2.6 3,126,253 + HP15_2983 0.50 -0.5 3,126,261 - HP15_2983 0.50 -1.3 3,126,261 - HP15_2983 0.50 +3.4 3,126,308 - HP15_2983 0.54 -0.1 3,126,375 + HP15_2983 0.58 -2.1
Or see this region's nucleotide sequence