Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2832 and HP15_2833 are separated by 390 nucleotides HP15_2833 and HP15_2834 are separated by 27 nucleotides HP15_2834 and HP15_2835 are separated by 282 nucleotides HP15_2835 and HP15_2836 are separated by 91 nucleotides
HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data) , at 2,974,962 to 2,976,719
_2832
HP15_2833: HP15_2833 - conserved hypothetical protein, at 2,977,110 to 2,977,334
_2833
HP15_2834: HP15_2834 - OmpA/MotB domain protein, at 2,977,362 to 2,978,171
_2834
HP15_2835: HP15_2835 - cold shock, CspA, at 2,978,454 to 2,978,660
_2835
HP15_2836: HP15_2836 - conserved hypothetical protein, membrane, at 2,978,752 to 2,979,126
_2836
Position (kb)
2977
2978
2979 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2976.405 kb on - strand, within HP15_2832 at 2976.514 kb on + strand, within HP15_2832 at 2976.745 kb on - strand at 2977.024 kb on + strand at 2977.029 kb on - strand at 2977.032 kb on - strand at 2977.130 kb on + strand at 2977.238 kb on - strand, within HP15_2833 at 2977.270 kb on - strand, within HP15_2833 at 2977.271 kb on + strand, within HP15_2833 at 2977.329 kb on + strand at 2977.392 kb on + strand at 2977.459 kb on + strand, within HP15_2834 at 2977.459 kb on + strand, within HP15_2834 at 2977.644 kb on - strand, within HP15_2834 at 2977.644 kb on - strand, within HP15_2834 at 2977.681 kb on - strand, within HP15_2834 at 2977.701 kb on + strand, within HP15_2834 at 2977.728 kb on - strand, within HP15_2834 at 2977.728 kb on - strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.787 kb on + strand, within HP15_2834 at 2977.794 kb on - strand, within HP15_2834 at 2977.807 kb on + strand, within HP15_2834 at 2977.812 kb on + strand, within HP15_2834 at 2977.849 kb on + strand, within HP15_2834 at 2977.856 kb on + strand, within HP15_2834 at 2977.864 kb on - strand, within HP15_2834 at 2977.945 kb on - strand, within HP15_2834 at 2977.949 kb on + strand, within HP15_2834 at 2977.980 kb on - strand, within HP15_2834 at 2977.988 kb on + strand, within HP15_2834 at 2978.002 kb on - strand, within HP15_2834 at 2978.010 kb on - strand, within HP15_2834 at 2978.039 kb on + strand, within HP15_2834 at 2978.184 kb on + strand at 2978.186 kb on - strand at 2978.287 kb on - strand at 2978.287 kb on - strand at 2978.296 kb on + strand at 2978.325 kb on - strand at 2978.525 kb on - strand, within HP15_2835 at 2978.525 kb on - strand, within HP15_2835 at 2978.555 kb on + strand, within HP15_2835 at 2978.597 kb on - strand, within HP15_2835 at 2978.665 kb on - strand at 2978.691 kb on + strand at 2978.699 kb on - strand at 2978.700 kb on - strand at 2978.700 kb on - strand at 2978.758 kb on - strand at 2978.758 kb on - strand at 2978.859 kb on + strand, within HP15_2836 at 2978.867 kb on - strand, within HP15_2836 at 2978.883 kb on - strand, within HP15_2836 at 2978.962 kb on + strand, within HP15_2836 at 2978.994 kb on - strand, within HP15_2836
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,976,405 - HP15_2832 0.82 +1.4 2,976,514 + HP15_2832 0.88 -1.0 2,976,745 - -0.7 2,977,024 + -2.4 2,977,029 - -3.1 2,977,032 - +1.3 2,977,130 + -0.6 2,977,238 - HP15_2833 0.57 +1.5 2,977,270 - HP15_2833 0.71 +1.4 2,977,271 + HP15_2833 0.72 +1.6 2,977,329 + -0.9 2,977,392 + -2.3 2,977,459 + HP15_2834 0.12 -2.1 2,977,459 + HP15_2834 0.12 -0.3 2,977,644 - HP15_2834 0.35 -1.2 2,977,644 - HP15_2834 0.35 +2.0 2,977,681 - HP15_2834 0.39 -0.7 2,977,701 + HP15_2834 0.42 -0.9 2,977,728 - HP15_2834 0.45 -0.2 2,977,728 - HP15_2834 0.45 -1.4 2,977,730 + HP15_2834 0.45 -3.0 2,977,730 + HP15_2834 0.45 -1.4 2,977,730 + HP15_2834 0.45 -1.2 2,977,730 + HP15_2834 0.45 -1.2 2,977,738 - HP15_2834 0.46 -2.1 2,977,738 - HP15_2834 0.46 +0.9 2,977,738 - HP15_2834 0.46 +0.7 2,977,738 - HP15_2834 0.46 +1.4 2,977,738 - HP15_2834 0.46 +1.4 2,977,787 + HP15_2834 0.52 -1.8 2,977,794 - HP15_2834 0.53 -1.9 2,977,807 + HP15_2834 0.55 -0.9 2,977,812 + HP15_2834 0.56 -0.2 2,977,849 + HP15_2834 0.60 -0.2 2,977,856 + HP15_2834 0.61 +0.3 2,977,864 - HP15_2834 0.62 -1.2 2,977,945 - HP15_2834 0.72 -0.9 2,977,949 + HP15_2834 0.72 -2.4 2,977,980 - HP15_2834 0.76 -0.1 2,977,988 + HP15_2834 0.77 -0.8 2,978,002 - HP15_2834 0.79 -0.9 2,978,010 - HP15_2834 0.80 -1.2 2,978,039 + HP15_2834 0.84 +0.1 2,978,184 + +0.6 2,978,186 - -0.4 2,978,287 - +1.9 2,978,287 - -0.0 2,978,296 + +1.4 2,978,325 - +0.6 2,978,525 - HP15_2835 0.34 -0.4 2,978,525 - HP15_2835 0.34 +0.6 2,978,555 + HP15_2835 0.49 +1.9 2,978,597 - HP15_2835 0.69 +0.8 2,978,665 - -1.7 2,978,691 + -0.4 2,978,699 - +1.8 2,978,700 - -0.7 2,978,700 - +0.1 2,978,758 - +0.4 2,978,758 - -0.7 2,978,859 + HP15_2836 0.29 -0.5 2,978,867 - HP15_2836 0.31 +1.8 2,978,883 - HP15_2836 0.35 -0.3 2,978,962 + HP15_2836 0.56 +0.6 2,978,994 - HP15_2836 0.65 -0.5
Or see this region's nucleotide sequence