Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2785 and HP15_2786 are separated by 53 nucleotides HP15_2786 and HP15_2787 are separated by 84 nucleotides HP15_2787 and HP15_2788 are separated by 257 nucleotides
HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139
_2785
HP15_2786: HP15_2786 - conserved hypothetical protein, secreted, at 2,936,193 to 2,936,882
_2786
HP15_2787: HP15_2787 - ABC-type amino acid transport/signal transduction system, at 2,936,967 to 2,937,611
_2787
HP15_2788: HP15_2788 - heat shock protein DnaJ-like protein, at 2,937,869 to 2,938,588
_2788
Position (kb)
2936
2937
2938 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2935.971 kb on + strand at 2936.015 kb on + strand at 2936.199 kb on - strand at 2936.258 kb on + strand at 2936.266 kb on - strand, within HP15_2786 at 2936.276 kb on - strand, within HP15_2786 at 2936.278 kb on + strand, within HP15_2786 at 2936.288 kb on + strand, within HP15_2786 at 2936.339 kb on + strand, within HP15_2786 at 2936.384 kb on - strand, within HP15_2786 at 2936.420 kb on + strand, within HP15_2786 at 2936.464 kb on + strand, within HP15_2786 at 2936.472 kb on - strand, within HP15_2786 at 2936.479 kb on + strand, within HP15_2786 at 2936.618 kb on + strand, within HP15_2786 at 2936.625 kb on + strand, within HP15_2786 at 2936.626 kb on - strand, within HP15_2786 at 2936.626 kb on - strand, within HP15_2786 at 2936.633 kb on - strand, within HP15_2786 at 2936.684 kb on + strand, within HP15_2786 at 2936.698 kb on + strand, within HP15_2786 at 2936.783 kb on - strand, within HP15_2786 at 2936.784 kb on + strand, within HP15_2786 at 2936.792 kb on - strand, within HP15_2786 at 2936.892 kb on - strand at 2936.958 kb on + strand at 2937.133 kb on - strand, within HP15_2787 at 2937.245 kb on + strand, within HP15_2787 at 2937.389 kb on + strand, within HP15_2787 at 2937.486 kb on + strand, within HP15_2787 at 2937.598 kb on - strand at 2937.634 kb on - strand at 2937.657 kb on - strand at 2937.848 kb on - strand at 2937.848 kb on - strand at 2937.987 kb on - strand, within HP15_2788 at 2938.010 kb on - strand, within HP15_2788 at 2938.030 kb on + strand, within HP15_2788 at 2938.111 kb on + strand, within HP15_2788 at 2938.134 kb on + strand, within HP15_2788 at 2938.142 kb on - strand, within HP15_2788 at 2938.142 kb on - strand, within HP15_2788 at 2938.142 kb on - strand, within HP15_2788 at 2938.159 kb on + strand, within HP15_2788 at 2938.401 kb on + strand, within HP15_2788
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,935,971 + -1.2 2,936,015 + -1.2 2,936,199 - -1.6 2,936,258 + +1.8 2,936,266 - HP15_2786 0.11 -3.2 2,936,276 - HP15_2786 0.12 +0.4 2,936,278 + HP15_2786 0.12 -1.9 2,936,288 + HP15_2786 0.14 +0.6 2,936,339 + HP15_2786 0.21 +0.6 2,936,384 - HP15_2786 0.28 +0.4 2,936,420 + HP15_2786 0.33 +0.8 2,936,464 + HP15_2786 0.39 +1.4 2,936,472 - HP15_2786 0.40 -0.1 2,936,479 + HP15_2786 0.41 +0.6 2,936,618 + HP15_2786 0.62 -1.2 2,936,625 + HP15_2786 0.63 +0.2 2,936,626 - HP15_2786 0.63 -1.4 2,936,626 - HP15_2786 0.63 -0.6 2,936,633 - HP15_2786 0.64 -0.2 2,936,684 + HP15_2786 0.71 -0.9 2,936,698 + HP15_2786 0.73 -0.1 2,936,783 - HP15_2786 0.86 -1.2 2,936,784 + HP15_2786 0.86 +0.4 2,936,792 - HP15_2786 0.87 -0.9 2,936,892 - +0.1 2,936,958 + +1.3 2,937,133 - HP15_2787 0.26 -0.8 2,937,245 + HP15_2787 0.43 -1.2 2,937,389 + HP15_2787 0.65 -0.4 2,937,486 + HP15_2787 0.80 -0.6 2,937,598 - -1.3 2,937,634 - -3.0 2,937,657 - +0.3 2,937,848 - +0.8 2,937,848 - +0.4 2,937,987 - HP15_2788 0.16 +0.9 2,938,010 - HP15_2788 0.20 -2.9 2,938,030 + HP15_2788 0.22 +1.4 2,938,111 + HP15_2788 0.34 -0.3 2,938,134 + HP15_2788 0.37 +1.1 2,938,142 - HP15_2788 0.38 -0.4 2,938,142 - HP15_2788 0.38 -1.6 2,938,142 - HP15_2788 0.38 +0.2 2,938,159 + HP15_2788 0.40 +1.4 2,938,401 + HP15_2788 0.74 -0.6
Or see this region's nucleotide sequence