Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2859

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
3,049,591	+		Psest_2857	0.89	+0.3
3,049,592	-		Psest_2857	0.89	+0.4
3,049,592	-		Psest_2857	0.89	-1.9
3,049,612	-				-1.9
3,049,785	+				-1.5
3,049,839	+				-1.9
3,049,840	-				-0.7
3,049,840	-				-0.2
3,049,840	-				-1.6
3,049,840	-				+0.1
3,049,840	-				-0.8
3,049,840	-				-0.8
3,049,841	+				-1.6
3,049,841	+				+0.4
3,049,842	-				+0.4
3,049,843	+				+0.3
3,049,844	-				+1.4
3,049,940	+				-0.4
3,049,940	+				+0.1
3,049,940	+				+1.1
3,049,940	+				+0.1
3,049,941	-				-0.5
3,049,941	-				-1.0
3,049,941	-				-2.2
3,049,946	+				+1.8
3,049,946	+				-0.5
3,049,946	+				-0.9
3,049,946	+				+0.5
3,049,946	+				+0.9
3,049,946	+				+1.0
3,049,946	+				+1.2
3,049,946	+				-0.2
3,049,946	+				+0.4
3,049,946	+				+1.3
3,049,947	+				-0.0
3,049,947	-				-0.6
3,049,947	-				+0.8
3,049,947	-				+0.3
3,049,947	-				-0.3
3,049,947	-				-0.9
3,049,947	-				+1.0
3,049,947	-				-0.9
3,050,058	-		Psest_2858	0.31	+0.5
3,050,058	-		Psest_2858	0.31	+1.7
3,050,058	-		Psest_2858	0.31	-2.1
3,050,168	+		Psest_2858	0.55	+0.0
3,050,168	+		Psest_2858	0.55	+0.6
3,050,168	+		Psest_2858	0.55	+0.3
3,050,168	+		Psest_2858	0.55	+1.2
3,050,168	+		Psest_2858	0.55	+0.4
3,050,168	+		Psest_2858	0.55	+1.6
3,050,168	+		Psest_2858	0.55	+0.6
3,050,168	+		Psest_2858	0.55	+0.9
3,050,168	+		Psest_2858	0.55	+1.0
3,050,168	+		Psest_2858	0.55	-0.1
3,050,168	+		Psest_2858	0.55	+0.9
3,050,168	+		Psest_2858	0.55	+0.5
3,050,168	+		Psest_2858	0.55	+0.5
3,050,168	+		Psest_2858	0.55	+0.9
3,050,168	+		Psest_2858	0.55	+1.2
3,050,168	+		Psest_2858	0.55	+0.8
3,050,168	+		Psest_2858	0.55	-2.2
3,050,168	+		Psest_2858	0.55	-0.4
3,050,168	+		Psest_2858	0.55	+1.9
3,050,169	-		Psest_2858	0.55	-1.5
3,050,169	-		Psest_2858	0.55	-0.5
3,050,169	-		Psest_2858	0.55	-0.6
3,050,169	-		Psest_2858	0.55	+0.0
3,050,169	-		Psest_2858	0.55	-0.5
3,050,169	-		Psest_2858	0.55	+0.3
3,050,169	-		Psest_2858	0.55	-0.6
3,050,169	-		Psest_2858	0.55	-0.4
3,050,169	-		Psest_2858	0.55	+0.4
3,050,169	-		Psest_2858	0.55	-2.0
3,050,169	-		Psest_2858	0.55	+0.2
3,050,169	-		Psest_2858	0.55	+0.7
3,050,169	-		Psest_2858	0.55	-0.4
3,050,169	-		Psest_2858	0.55	-1.1
3,050,169	-		Psest_2858	0.55	+0.7
3,050,169	-		Psest_2858	0.55	-0.4
3,050,169	-		Psest_2858	0.55	-2.2
3,050,169	-		Psest_2858	0.55	-0.4
3,050,188	+		Psest_2858	0.59	+0.4
3,050,188	+		Psest_2858	0.59	+0.0
3,050,189	-		Psest_2858	0.60	-2.1
3,050,346	-				-0.2
3,050,374	+				+0.4
3,050,563	-		Psest_2859	0.20	+0.2
3,050,622	+		Psest_2859	0.29	+0.9
3,050,622	+		Psest_2859	0.29	+2.5
3,050,622	+		Psest_2859	0.29	-0.2
3,050,622	+		Psest_2859	0.29	+0.7
3,050,622	+		Psest_2859	0.29	-0.3
3,050,622	+		Psest_2859	0.29	+0.6
3,050,622	+		Psest_2859	0.29	+1.1
3,050,623	-		Psest_2859	0.29	+1.2
3,050,623	-		Psest_2859	0.29	+1.0
3,050,623	-		Psest_2859	0.29	+1.8
3,050,623	-		Psest_2859	0.29	-0.1
3,050,623	-		Psest_2859	0.29	+1.9
3,050,623	-		Psest_2859	0.29	+0.0
3,050,623	-		Psest_2859	0.29	-0.4
3,050,679	+		Psest_2859	0.38	-0.8
3,050,735	+		Psest_2859	0.47	-1.3
3,050,735	+		Psest_2859	0.47	-0.6
3,050,736	-		Psest_2859	0.47	+0.5
3,050,736	-		Psest_2859	0.47	+0.6
3,050,736	-		Psest_2859	0.47	-0.6
3,050,736	-		Psest_2859	0.47	-0.1
3,050,736	-		Psest_2859	0.47	+0.2
3,050,880	+		Psest_2859	0.70	-1.4
3,050,880	+		Psest_2859	0.70	-0.4
3,050,881	-		Psest_2859	0.70	-0.2
3,050,881	-		Psest_2859	0.70	+1.6
3,050,881	-		Psest_2859	0.70	+0.4
3,050,926	-		Psest_2859	0.77	+0.3
3,050,973	-		Psest_2859	0.84	+1.3
3,051,067	+				-1.2
3,051,067	+				+1.2
3,051,067	+				-1.1
3,051,067	+				-2.4
3,051,067	+				-0.9
3,051,067	+				-0.8
3,051,067	+				-1.1
3,051,068	+				-2.3
3,051,068	-				+0.5
3,051,068	-				+1.5
3,051,068	-				+0.3
3,051,141	+				+1.7
3,051,152	+				-1.4
3,051,176	-				+1.0
3,051,222	+				-0.1
3,051,266	+		Psest_2860	0.12	+0.1
3,051,285	+		Psest_2860	0.16	+0.1
3,051,285	+		Psest_2860	0.16	+1.3
3,051,548	+		Psest_2860	0.69	+0.9
3,051,549	-		Psest_2860	0.69	+0.7
3,051,549	-		Psest_2860	0.69	+1.1
3,051,549	-		Psest_2860	0.69	+0.8
3,051,549	-		Psest_2860	0.69	-0.5
3,051,614	+		Psest_2860	0.82	+0.0
3,051,615	-		Psest_2860	0.82	-1.6
3,051,629	+		Psest_2860	0.85	-0.4
3,051,629	+		Psest_2860	0.85	-0.6
3,051,630	-		Psest_2860	0.85	-0.1
3,051,692	+				-0.8
3,051,692	+				-1.5
3,051,731	+				+0.0
3,051,732	-				+0.4
3,051,780	+		Psest_2861	0.15	-0.6
3,051,780	+		Psest_2861	0.15	+1.2
3,051,781	-		Psest_2861	0.16	+1.1
3,051,814	+		Psest_2861	0.22	-1.4
3,051,814	+		Psest_2861	0.22	+1.2
3,051,840	+		Psest_2861	0.28	-1.1
3,051,840	+		Psest_2861	0.28	-0.8
3,051,840	+		Psest_2861	0.28	+3.1
3,051,840	+		Psest_2861	0.28	-0.3
3,051,840	+		Psest_2861	0.28	-1.0
3,051,841	-		Psest_2861	0.28	+1.4
3,051,841	-		Psest_2861	0.28	+0.7
3,051,861	+		Psest_2861	0.32	-0.5
3,051,861	+		Psest_2861	0.32	+1.0
3,051,862	-		Psest_2861	0.32	+0.8
3,051,862	-		Psest_2861	0.32	+0.7
3,051,973	+		Psest_2861	0.55	-0.3
3,051,973	+		Psest_2861	0.55	-0.0
3,051,973	+		Psest_2861	0.55	-0.2
3,051,973	+		Psest_2861	0.55	+0.3
3,051,973	+		Psest_2861	0.55	-1.3
3,051,974	-		Psest_2861	0.55	-0.5
3,051,974	-		Psest_2861	0.55	-0.1
3,051,974	-		Psest_2861	0.55	+1.5