Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28440

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
2,972,982	+		PGA1_c28430	0.18	-0.8
2,973,007	+		PGA1_c28430	0.21	-1.6
2,973,048	+		PGA1_c28430	0.24	-1.5
2,973,048	+		PGA1_c28430	0.24	-0.5
2,973,048	+		PGA1_c28430	0.24	+0.9
2,973,048	+		PGA1_c28430	0.24	-0.5
2,973,063	+		PGA1_c28430	0.25	-1.9
2,973,071	-		PGA1_c28430	0.26	-0.8
2,973,073	+		PGA1_c28430	0.26	+1.0
2,973,128	-		PGA1_c28430	0.31	+1.2
2,973,139	+		PGA1_c28430	0.32	+0.9
2,973,161	+		PGA1_c28430	0.34	+0.6
2,973,180	+		PGA1_c28430	0.36	+1.4
2,973,198	-		PGA1_c28430	0.37	-1.3
2,973,253	-		PGA1_c28430	0.42	+1.0
2,973,288	+		PGA1_c28430	0.45	-1.5
2,973,288	+		PGA1_c28430	0.45	+0.0
2,973,293	+		PGA1_c28430	0.45	+0.1
2,973,293	+		PGA1_c28430	0.45	+0.0
2,973,293	+		PGA1_c28430	0.45	-1.9
2,973,293	+		PGA1_c28430	0.45	-0.5
2,973,301	-		PGA1_c28430	0.46	+1.0
2,973,301	-		PGA1_c28430	0.46	+1.2
2,973,301	-		PGA1_c28430	0.46	-1.5
2,973,301	-		PGA1_c28430	0.46	-2.8
2,973,301	-		PGA1_c28430	0.46	-0.8
2,973,301	-		PGA1_c28430	0.46	-1.6
2,973,301	-		PGA1_c28430	0.46	-0.4
2,973,301	-		PGA1_c28430	0.46	-1.8
2,973,301	-		PGA1_c28430	0.46	-1.1
2,973,301	-		PGA1_c28430	0.46	-1.6
2,973,301	-		PGA1_c28430	0.46	+1.4
2,973,301	-		PGA1_c28430	0.46	-2.5
2,973,301	-		PGA1_c28430	0.46	+0.8
2,973,301	-		PGA1_c28430	0.46	+0.3
2,973,303	+		PGA1_c28430	0.46	+0.2
2,973,311	-		PGA1_c28430	0.47	-1.6
2,973,336	-		PGA1_c28430	0.49	-1.0
2,973,390	+		PGA1_c28430	0.54	+1.2
2,973,414	+		PGA1_c28430	0.56	-1.3
2,973,423	+		PGA1_c28430	0.57	-0.6
2,973,439	+		PGA1_c28430	0.58	+0.5
2,973,447	-		PGA1_c28430	0.59	+0.7
2,973,447	-		PGA1_c28430	0.59	+0.9
2,973,447	-		PGA1_c28430	0.59	+0.7
2,973,480	-		PGA1_c28430	0.61	+1.3
2,973,483	+		PGA1_c28430	0.62	-2.7
2,973,483	+		PGA1_c28430	0.62	+0.5
2,973,539	+		PGA1_c28430	0.67	-0.1
2,973,547	-		PGA1_c28430	0.67	+0.4
2,973,547	-		PGA1_c28430	0.67	-2.6
2,973,599	+		PGA1_c28430	0.72	+1.7
2,973,599	+		PGA1_c28430	0.72	+1.5
2,973,599	+		PGA1_c28430	0.72	-0.1
2,973,599	+		PGA1_c28430	0.72	+0.2
2,973,599	+		PGA1_c28430	0.72	-1.8
2,973,607	-		PGA1_c28430	0.72	+1.0
2,973,607	-		PGA1_c28430	0.72	+1.1
2,973,651	+		PGA1_c28430	0.76	+1.6
2,973,658	-		PGA1_c28430	0.77	+0.4
2,973,659	-		PGA1_c28430	0.77	+0.4
2,973,677	+		PGA1_c28430	0.78	-1.3
2,973,681	-		PGA1_c28430	0.79	-0.6
2,973,685	+		PGA1_c28430	0.79	-2.5
2,973,685	+		PGA1_c28430	0.79	+0.5
2,973,685	-		PGA1_c28430	0.79	-1.3
2,973,693	-		PGA1_c28430	0.80	-2.1
2,973,693	-		PGA1_c28430	0.80	+0.1
2,973,746	+		PGA1_c28430	0.84	+1.3
2,973,761	+		PGA1_c28430	0.86	+0.6
2,973,769	-		PGA1_c28430	0.86	-0.1
2,973,781	-		PGA1_c28430	0.87	-1.1
2,973,806	+		PGA1_c28430	0.90	+3.3
2,973,814	-				+0.9
2,973,815	+				+0.5
2,973,821	+				-1.3
2,973,823	-				-2.8
2,973,829	-				-2.8
2,973,835	+				-0.3
2,973,838	+				-2.1
2,973,845	+				+1.9
2,973,845	-				+0.5
2,973,860	-				-2.9
2,973,952	+				-1.8
2,973,956	+				-2.1
2,973,980	+				+1.0
2,973,980	+				+0.9
2,973,980	+				+1.4
2,973,980	+				+0.9
2,973,980	+				-0.9
2,973,980	+				-1.1
2,973,980	+				-1.8
2,973,980	+				+1.2
2,973,985	+				+0.5
2,973,985	+				+1.2
2,973,985	+				+0.8
2,973,985	+				-2.8
2,973,988	-				-0.8
2,973,988	-				+1.1
2,973,988	-				-0.1
2,973,988	-				-1.8
2,973,988	-				-0.2
2,973,988	-				+1.3
2,973,988	-				+0.8
2,973,988	-				+1.5
2,973,988	-				-2.9
2,973,988	-				+1.3
2,973,988	-				-0.0
2,973,993	-				-0.8
2,973,993	-				+0.3
2,973,993	-				+0.5
2,973,993	-				-1.1
2,973,996	+				-0.1
2,973,997	+				-0.8
2,973,998	-				+0.7
2,974,004	-				-2.1
2,974,012	+				+1.4
2,974,023	+				+2.5
2,974,023	+				+1.8
2,974,029	+				-0.4
2,974,029	+				-3.5
2,974,029	+				-1.1
2,974,029	+				-2.2
2,974,031	-				-1.5
2,974,031	-				+2.4
2,974,031	-				-2.3
2,974,031	-				+1.4
2,974,031	-				-0.9
2,974,031	-				-0.2
2,974,037	-				+0.7
2,974,037	-				+0.5
2,974,037	-				+0.1
2,974,037	-				+1.3
2,974,037	-				-0.6
2,974,037	-				-0.5
2,974,037	-				-0.7
2,974,037	-				+0.5
2,974,037	-				+1.6
2,974,037	-				-0.5
2,974,037	-				+0.8
2,974,037	-				-1.1
2,974,037	-				-0.7
2,974,037	-				+0.1
2,974,037	-				-2.6
2,974,037	-				+2.1
2,974,037	-				+0.7
2,974,073	+		PGA1_c28440	0.16	-1.3
2,974,074	+		PGA1_c28440	0.16	-1.5
2,974,140	-		PGA1_c28440	0.26	-0.7
2,974,200	+		PGA1_c28440	0.36	-0.3
2,974,296	+		PGA1_c28440	0.52	-0.8
2,974,323	+		PGA1_c28440	0.56	-2.5
2,974,328	+		PGA1_c28440	0.57	-1.3
2,974,336	+		PGA1_c28440	0.58	+1.9
2,974,338	+		PGA1_c28440	0.58	+1.2
2,974,346	-		PGA1_c28440	0.60	+1.4
2,974,346	-		PGA1_c28440	0.60	+0.0
2,974,351	-		PGA1_c28440	0.61	-1.7
2,974,352	+		PGA1_c28440	0.61	-0.5
2,974,378	+		PGA1_c28440	0.65	+0.3
2,974,384	-		PGA1_c28440	0.66	-1.5
2,974,415	-		PGA1_c28440	0.71	+0.7
2,974,448	-		PGA1_c28440	0.76	-2.2
2,974,450	-		PGA1_c28440	0.77	+0.2
2,974,473	+		PGA1_c28440	0.80	-3.2
2,974,485	-		PGA1_c28440	0.82	-1.9
2,974,523	-		PGA1_c28440	0.88	+0.5
2,974,537	+				+0.9
2,974,545	-				-0.7
2,974,593	+				-1.1
2,974,604	+				+1.4
2,974,642	+				-2.4
2,974,642	+				+0.9
2,974,662	+				+0.4
2,974,662	+				+0.7
2,974,662	+				+0.7
2,974,662	+				-1.5
2,974,664	+				-0.1
2,974,664	+				+0.5
2,974,670	-				+1.6
2,974,670	-				+0.6
2,974,670	-				-1.1
2,974,670	-				-1.7
2,974,670	-				-0.5
2,974,672	-				+1.1
2,974,686	+				+0.5
2,974,694	-				+1.1
2,974,718	-				-3.1
2,974,867	-		PGA1_c28450	0.16	+1.2
2,974,925	+		PGA1_c28450	0.19	+2.4
2,974,925	+		PGA1_c28450	0.19	-2.6
2,974,933	-		PGA1_c28450	0.20	+1.7
2,974,939	+		PGA1_c28450	0.20	+0.9
2,974,939	+		PGA1_c28450	0.20	-1.0
2,974,939	+		PGA1_c28450	0.20	+0.2
2,974,939	+		PGA1_c28450	0.20	+0.3
2,974,947	-		PGA1_c28450	0.20	+0.9
2,974,954	+		PGA1_c28450	0.21	-2.9
2,974,972	-		PGA1_c28450	0.22	+1.0
2,975,003	+		PGA1_c28450	0.24	+0.4
2,975,032	+		PGA1_c28450	0.26	-1.3
2,975,034	-		PGA1_c28450	0.26	-1.1
2,975,076	-		PGA1_c28450	0.28	-0.1
2,975,144	-		PGA1_c28450	0.32	-3.5
2,975,195	-		PGA1_c28450	0.36	+1.5
2,975,210	+		PGA1_c28450	0.37	+1.7
2,975,266	+		PGA1_c28450	0.40	+0.3
2,975,266	+		PGA1_c28450	0.40	+1.9
2,975,266	+		PGA1_c28450	0.40	+2.7
2,975,266	+		PGA1_c28450	0.40	+0.8
2,975,274	-		PGA1_c28450	0.40	-1.4
2,975,274	-		PGA1_c28450	0.40	+0.1
2,975,344	-		PGA1_c28450	0.45	+2.3
2,975,446	+		PGA1_c28450	0.51	+0.7
2,975,446	+		PGA1_c28450	0.51	+1.5
2,975,494	-		PGA1_c28450	0.54	+1.3
2,975,495	-		PGA1_c28450	0.54	+1.7
2,975,495	-		PGA1_c28450	0.54	+1.1
2,975,505	-		PGA1_c28450	0.54	+1.5
2,975,532	-		PGA1_c28450	0.56	-0.5
2,975,547	-		PGA1_c28450	0.57	-1.1
2,975,583	+		PGA1_c28450	0.59	-0.1