Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2740 and HP15_2741 are separated by 89 nucleotides HP15_2741 and HP15_2742 are separated by 72 nucleotides HP15_2742 and HP15_2743 are separated by 34 nucleotides
HP15_2740: HP15_2740 - membrane protein containing DUF6, transmembrane, at 2,892,447 to 2,893,343
_2740
HP15_2741: HP15_2741 - transcriptional regulator, AraC family protein, at 2,893,433 to 2,894,359
_2741
HP15_2742: HP15_2742 - protein containing prepilin-type cleavage/methylation, N-terminal domains, at 2,894,432 to 2,894,965
_2742
HP15_2743: HP15_2743 - conserved hypothetical protein, at 2,895,000 to 2,895,413
_2743
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2892.442 kb on - strand at 2892.614 kb on + strand, within HP15_2740 at 2892.726 kb on - strand, within HP15_2740 at 2892.766 kb on + strand, within HP15_2740 at 2892.786 kb on + strand, within HP15_2740 at 2892.817 kb on - strand, within HP15_2740 at 2892.926 kb on - strand, within HP15_2740 at 2893.000 kb on + strand, within HP15_2740 at 2893.008 kb on - strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.100 kb on - strand, within HP15_2740 at 2893.100 kb on - strand, within HP15_2740 at 2893.138 kb on - strand, within HP15_2740 at 2893.266 kb on - strand at 2893.275 kb on + strand at 2893.278 kb on - strand at 2893.303 kb on + strand at 2893.318 kb on - strand at 2893.354 kb on + strand at 2893.436 kb on - strand at 2893.464 kb on + strand at 2893.622 kb on + strand, within HP15_2741 at 2893.622 kb on + strand, within HP15_2741 at 2893.643 kb on - strand, within HP15_2741 at 2893.654 kb on + strand, within HP15_2741 at 2893.662 kb on - strand, within HP15_2741 at 2893.664 kb on - strand, within HP15_2741 at 2893.686 kb on - strand, within HP15_2741 at 2893.729 kb on + strand, within HP15_2741 at 2893.914 kb on + strand, within HP15_2741 at 2894.006 kb on + strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.183 kb on + strand, within HP15_2741 at 2894.196 kb on + strand, within HP15_2741 at 2894.273 kb on - strand at 2894.279 kb on + strand at 2894.319 kb on + strand at 2894.341 kb on + strand at 2894.374 kb on + strand at 2894.377 kb on - strand at 2894.428 kb on + strand at 2894.483 kb on - strand at 2894.483 kb on - strand at 2894.483 kb on - strand at 2894.529 kb on + strand, within HP15_2742 at 2894.529 kb on + strand, within HP15_2742 at 2894.529 kb on + strand, within HP15_2742 at 2894.562 kb on - strand, within HP15_2742 at 2894.658 kb on - strand, within HP15_2742 at 2894.661 kb on - strand, within HP15_2742 at 2894.702 kb on - strand, within HP15_2742 at 2895.019 kb on - strand at 2895.116 kb on + strand, within HP15_2743 at 2895.124 kb on - strand, within HP15_2743 at 2895.174 kb on + strand, within HP15_2743 at 2895.258 kb on - strand, within HP15_2743 at 2895.297 kb on - strand, within HP15_2743 at 2895.306 kb on + strand, within HP15_2743 at 2895.306 kb on + strand, within HP15_2743 at 2895.347 kb on + strand, within HP15_2743 at 2895.353 kb on + strand, within HP15_2743 at 2895.355 kb on - strand, within HP15_2743
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,892,442 - +1.5 2,892,614 + HP15_2740 0.19 +0.5 2,892,726 - HP15_2740 0.31 -0.2 2,892,766 + HP15_2740 0.36 +0.5 2,892,786 + HP15_2740 0.38 -0.0 2,892,817 - HP15_2740 0.41 -0.1 2,892,926 - HP15_2740 0.53 -0.5 2,893,000 + HP15_2740 0.62 -1.8 2,893,008 - HP15_2740 0.63 -1.4 2,893,092 + HP15_2740 0.72 -0.9 2,893,092 + HP15_2740 0.72 +1.4 2,893,092 + HP15_2740 0.72 -0.3 2,893,092 + HP15_2740 0.72 +0.9 2,893,092 + HP15_2740 0.72 -0.8 2,893,100 - HP15_2740 0.73 -1.5 2,893,100 - HP15_2740 0.73 -1.6 2,893,138 - HP15_2740 0.77 -1.0 2,893,266 - -0.7 2,893,275 + +0.5 2,893,278 - -2.6 2,893,303 + -0.3 2,893,318 - +0.1 2,893,354 + -0.8 2,893,436 - +1.4 2,893,464 + +0.3 2,893,622 + HP15_2741 0.20 -0.9 2,893,622 + HP15_2741 0.20 -1.8 2,893,643 - HP15_2741 0.23 -1.4 2,893,654 + HP15_2741 0.24 -2.0 2,893,662 - HP15_2741 0.25 -2.6 2,893,664 - HP15_2741 0.25 -0.5 2,893,686 - HP15_2741 0.27 -3.5 2,893,729 + HP15_2741 0.32 +2.5 2,893,914 + HP15_2741 0.52 +0.0 2,894,006 + HP15_2741 0.62 -0.4 2,894,080 - HP15_2741 0.70 -2.5 2,894,080 - HP15_2741 0.70 -0.5 2,894,080 - HP15_2741 0.70 -1.4 2,894,164 - HP15_2741 0.79 +1.0 2,894,164 - HP15_2741 0.79 -1.9 2,894,183 + HP15_2741 0.81 -1.4 2,894,196 + HP15_2741 0.82 -1.2 2,894,273 - -4.0 2,894,279 + -0.1 2,894,319 + -0.4 2,894,341 + -0.1 2,894,374 + +0.1 2,894,377 - +1.5 2,894,428 + +1.0 2,894,483 - -2.0 2,894,483 - -2.6 2,894,483 - -1.0 2,894,529 + HP15_2742 0.18 -2.5 2,894,529 + HP15_2742 0.18 -0.0 2,894,529 + HP15_2742 0.18 -1.7 2,894,562 - HP15_2742 0.24 -0.5 2,894,658 - HP15_2742 0.42 +0.5 2,894,661 - HP15_2742 0.43 +0.5 2,894,702 - HP15_2742 0.51 -0.1 2,895,019 - -0.3 2,895,116 + HP15_2743 0.28 +1.5 2,895,124 - HP15_2743 0.30 +0.9 2,895,174 + HP15_2743 0.42 -2.0 2,895,258 - HP15_2743 0.62 +1.1 2,895,297 - HP15_2743 0.72 -0.1 2,895,306 + HP15_2743 0.74 +1.5 2,895,306 + HP15_2743 0.74 -0.5 2,895,347 + HP15_2743 0.84 -1.3 2,895,353 + HP15_2743 0.85 -0.7 2,895,355 - HP15_2743 0.86 +3.5
Or see this region's nucleotide sequence