Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2649 and HP15_2650 overlap by 4 nucleotides HP15_2650 and HP15_2651 are separated by 105 nucleotides HP15_2651 and HP15_2652 are separated by 105 nucleotides HP15_2652 and HP15_2653 overlap by 14 nucleotides
HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518
_2649
HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805
_2650
HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011
_2651
HP15_2652: HP15_2652 - zinc/iron permease, at 2,802,117 to 2,802,902
_2652
HP15_2653: HP15_2653 - transcriptional regulator, LysR family protein, at 2,802,889 to 2,803,797
_2653
Position (kb)
2800
2801
2802
2803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2799.918 kb on - strand, within HP15_2649 at 2799.924 kb on - strand, within HP15_2649 at 2800.014 kb on + strand, within HP15_2649 at 2800.022 kb on - strand, within HP15_2649 at 2800.120 kb on - strand, within HP15_2649 at 2800.212 kb on + strand, within HP15_2649 at 2800.305 kb on - strand, within HP15_2649 at 2800.600 kb on - strand, within HP15_2650 at 2800.664 kb on + strand, within HP15_2650 at 2800.765 kb on + strand, within HP15_2650 at 2800.773 kb on - strand, within HP15_2650 at 2800.829 kb on - strand at 2800.870 kb on + strand at 2800.918 kb on + strand at 2801.077 kb on - strand, within HP15_2651 at 2801.101 kb on + strand, within HP15_2651 at 2801.188 kb on - strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.442 kb on + strand, within HP15_2651 at 2801.479 kb on + strand, within HP15_2651 at 2801.479 kb on + strand, within HP15_2651 at 2801.614 kb on - strand, within HP15_2651 at 2801.748 kb on + strand, within HP15_2651 at 2801.791 kb on + strand, within HP15_2651 at 2801.799 kb on - strand, within HP15_2651 at 2801.799 kb on - strand, within HP15_2651 at 2801.799 kb on - strand, within HP15_2651 at 2802.223 kb on + strand, within HP15_2652 at 2802.395 kb on - strand, within HP15_2652 at 2802.490 kb on + strand, within HP15_2652 at 2802.588 kb on + strand, within HP15_2652 at 2802.707 kb on + strand, within HP15_2652 at 2802.899 kb on - strand at 2802.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,799,918 - HP15_2649 0.36 -0.5 2,799,924 - HP15_2649 0.36 -0.4 2,800,014 + HP15_2649 0.46 -1.5 2,800,022 - HP15_2649 0.47 -1.2 2,800,120 - HP15_2649 0.57 +4.5 2,800,212 + HP15_2649 0.67 -3.4 2,800,305 - HP15_2649 0.77 +0.1 2,800,600 - HP15_2650 0.29 -1.1 2,800,664 + HP15_2650 0.51 +0.4 2,800,765 + HP15_2650 0.86 -1.8 2,800,773 - HP15_2650 0.89 -1.7 2,800,829 - +1.6 2,800,870 + +1.3 2,800,918 + +0.8 2,801,077 - HP15_2651 0.15 +0.8 2,801,101 + HP15_2651 0.17 +0.1 2,801,188 - HP15_2651 0.25 +0.7 2,801,234 + HP15_2651 0.29 +0.1 2,801,234 + HP15_2651 0.29 -0.5 2,801,234 + HP15_2651 0.29 +1.5 2,801,234 + HP15_2651 0.29 +3.1 2,801,442 + HP15_2651 0.48 -3.6 2,801,479 + HP15_2651 0.52 -0.9 2,801,479 + HP15_2651 0.52 -0.1 2,801,614 - HP15_2651 0.64 -2.2 2,801,748 + HP15_2651 0.76 +0.3 2,801,791 + HP15_2651 0.80 -1.6 2,801,799 - HP15_2651 0.81 +0.5 2,801,799 - HP15_2651 0.81 -3.4 2,801,799 - HP15_2651 0.81 +0.3 2,802,223 + HP15_2652 0.13 -0.8 2,802,395 - HP15_2652 0.35 +0.2 2,802,490 + HP15_2652 0.47 +0.4 2,802,588 + HP15_2652 0.60 +2.1 2,802,707 + HP15_2652 0.75 -1.1 2,802,899 - +1.2 2,802,924 - -0.3
Or see this region's nucleotide sequence