Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2646 and HP15_2647 are separated by 99 nucleotides HP15_2647 and HP15_2648 are separated by 32 nucleotides HP15_2648 and HP15_2649 overlap by 14 nucleotides
HP15_2646: HP15_2646 - radical SAM domain protein, at 2,796,298 to 2,797,359
_2646
HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111
_2647
HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596
_2648
HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518
_2649
Position (kb)
2797
2798
2799
2800 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2796.489 kb on - strand, within HP15_2646 at 2796.545 kb on + strand, within HP15_2646 at 2796.645 kb on - strand, within HP15_2646 at 2796.649 kb on + strand, within HP15_2646 at 2796.806 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.848 kb on - strand, within HP15_2646 at 2796.876 kb on - strand, within HP15_2646 at 2796.927 kb on + strand, within HP15_2646 at 2796.945 kb on + strand, within HP15_2646 at 2797.139 kb on + strand, within HP15_2646 at 2797.147 kb on - strand, within HP15_2646 at 2797.187 kb on + strand, within HP15_2646 at 2797.245 kb on - strand, within HP15_2646 at 2797.295 kb on + strand at 2797.351 kb on + strand at 2797.402 kb on + strand at 2797.431 kb on + strand at 2797.694 kb on + strand, within HP15_2647 at 2797.771 kb on - strand, within HP15_2647 at 2797.804 kb on - strand, within HP15_2647 at 2797.823 kb on + strand, within HP15_2647 at 2797.828 kb on - strand, within HP15_2647 at 2798.000 kb on + strand, within HP15_2647 at 2798.028 kb on + strand, within HP15_2647 at 2798.033 kb on + strand, within HP15_2647 at 2798.033 kb on + strand, within HP15_2647 at 2798.080 kb on + strand, within HP15_2647 at 2798.155 kb on - strand, within HP15_2647 at 2798.175 kb on + strand, within HP15_2647 at 2798.398 kb on + strand, within HP15_2647 at 2798.425 kb on + strand, within HP15_2647 at 2798.495 kb on - strand, within HP15_2647 at 2798.517 kb on - strand, within HP15_2647 at 2798.573 kb on - strand, within HP15_2647 at 2798.617 kb on - strand, within HP15_2647 at 2798.633 kb on + strand, within HP15_2647 at 2798.904 kb on + strand, within HP15_2647 at 2798.991 kb on - strand at 2799.071 kb on - strand at 2799.130 kb on + strand at 2799.279 kb on - strand, within HP15_2648 at 2799.399 kb on - strand, within HP15_2648 at 2799.401 kb on + strand, within HP15_2648 at 2799.460 kb on + strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.552 kb on - strand at 2799.918 kb on - strand, within HP15_2649 at 2799.924 kb on - strand, within HP15_2649 at 2800.014 kb on + strand, within HP15_2649 at 2800.022 kb on - strand, within HP15_2649
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,796,489 - HP15_2646 0.18 +0.6 2,796,545 + HP15_2646 0.23 -0.0 2,796,645 - HP15_2646 0.33 -1.2 2,796,649 + HP15_2646 0.33 -1.9 2,796,806 + HP15_2646 0.48 -2.3 2,796,840 + HP15_2646 0.51 -0.3 2,796,840 + HP15_2646 0.51 +0.4 2,796,848 - HP15_2646 0.52 +4.1 2,796,876 - HP15_2646 0.54 +0.6 2,796,927 + HP15_2646 0.59 -0.5 2,796,945 + HP15_2646 0.61 +0.3 2,797,139 + HP15_2646 0.79 -1.3 2,797,147 - HP15_2646 0.80 +1.9 2,797,187 + HP15_2646 0.84 -0.8 2,797,245 - HP15_2646 0.89 -0.9 2,797,295 + -0.1 2,797,351 + +0.6 2,797,402 + +1.5 2,797,431 + -0.2 2,797,694 + HP15_2647 0.14 +1.2 2,797,771 - HP15_2647 0.19 +0.9 2,797,804 - HP15_2647 0.21 -0.8 2,797,823 + HP15_2647 0.22 +0.5 2,797,828 - HP15_2647 0.22 -0.6 2,798,000 + HP15_2647 0.33 -0.5 2,798,028 + HP15_2647 0.34 -0.1 2,798,033 + HP15_2647 0.35 -0.4 2,798,033 + HP15_2647 0.35 +1.5 2,798,080 + HP15_2647 0.38 +1.2 2,798,155 - HP15_2647 0.42 -0.2 2,798,175 + HP15_2647 0.43 -1.8 2,798,398 + HP15_2647 0.57 -1.5 2,798,425 + HP15_2647 0.58 -0.1 2,798,495 - HP15_2647 0.63 +0.1 2,798,517 - HP15_2647 0.64 -0.9 2,798,573 - HP15_2647 0.67 -1.5 2,798,617 - HP15_2647 0.70 -0.3 2,798,633 + HP15_2647 0.71 -1.6 2,798,904 + HP15_2647 0.87 +2.1 2,798,991 - -1.9 2,799,071 - +3.1 2,799,130 + -1.0 2,799,279 - HP15_2648 0.30 -1.0 2,799,399 - HP15_2648 0.56 +0.7 2,799,401 + HP15_2648 0.57 -0.0 2,799,460 + HP15_2648 0.70 +0.5 2,799,545 - HP15_2648 0.89 -1.7 2,799,545 - HP15_2648 0.89 +0.0 2,799,545 - HP15_2648 0.89 -0.5 2,799,552 - +0.3 2,799,918 - HP15_2649 0.36 -0.5 2,799,924 - HP15_2649 0.36 -0.4 2,800,014 + HP15_2649 0.46 -1.5 2,800,022 - HP15_2649 0.47 -1.2
Or see this region's nucleotide sequence