Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0271

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0270 and Psest_0271 are separated by 29 nucleotidesPsest_0271 and Psest_0272 are separated by 52 nucleotides Psest_0270: Psest_0270 - carbamate kinase, at 286,128 to 287,051 _0270 Psest_0271: Psest_0271 - ornithine carbamoyltransferase, at 287,081 to 288,091 _0271 Psest_0272: Psest_0272 - arginine deiminase, at 288,144 to 289,397 _0272 Position (kb) 287 288 289Strain fitness (log2 ratio) -2 -1 0 1 2 3at 286.129 kb on + strandat 286.129 kb on + strandat 286.129 kb on + strandat 286.130 kb on - strandat 286.131 kb on + strandat 286.131 kb on + strandat 286.131 kb on + strandat 286.131 kb on + strandat 286.131 kb on + strandat 286.131 kb on + strandat 286.132 kb on - strandat 286.358 kb on - strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.480 kb on + strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.481 kb on - strand, within Psest_0270at 286.482 kb on + strand, within Psest_0270at 286.482 kb on + strand, within Psest_0270at 286.483 kb on - strand, within Psest_0270at 286.483 kb on - strand, within Psest_0270at 286.483 kb on - strand, within Psest_0270at 286.483 kb on - strand, within Psest_0270at 286.483 kb on - strand, within Psest_0270at 286.798 kb on + strand, within Psest_0270at 286.799 kb on - strand, within Psest_0270at 286.799 kb on - strand, within Psest_0270at 286.799 kb on - strand, within Psest_0270at 286.799 kb on - strand, within Psest_0270at 286.799 kb on - strand, within Psest_0270at 286.851 kb on + strand, within Psest_0270at 286.851 kb on + strand, within Psest_0270at 286.852 kb on - strand, within Psest_0270at 286.852 kb on - strand, within Psest_0270at 286.852 kb on - strand, within Psest_0270at 286.861 kb on + strand, within Psest_0270at 286.861 kb on + strand, within Psest_0270at 286.862 kb on - strand, within Psest_0270at 286.862 kb on - strand, within Psest_0270at 286.862 kb on - strand, within Psest_0270at 286.862 kb on - strand, within Psest_0270at 287.037 kb on + strandat 287.038 kb on - strandat 287.174 kb on + strandat 287.174 kb on + strandat 287.175 kb on - strandat 287.214 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.582 kb on - strand, within Psest_0271at 287.611 kb on - strand, within Psest_0271at 287.616 kb on + strand, within Psest_0271at 287.616 kb on + strand, within Psest_0271at 287.617 kb on - strand, within Psest_0271at 287.617 kb on - strand, within Psest_0271at 287.691 kb on + strand, within Psest_0271at 287.692 kb on - strand, within Psest_0271at 287.692 kb on - strand, within Psest_0271at 287.772 kb on + strand, within Psest_0271at 287.773 kb on - strand, within Psest_0271at 287.773 kb on - strand, within Psest_0271at 287.788 kb on - strand, within Psest_0271at 287.788 kb on - strand, within Psest_0271at 287.788 kb on - strand, within Psest_0271at 287.861 kb on - strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.986 kb on - strand, within Psest_0271at 287.986 kb on - strand, within Psest_0271at 287.986 kb on - strand, within Psest_0271at 288.024 kb on + strandat 288.079 kb on + strandat 288.148 kb on + strandat 288.149 kb on - strandat 288.230 kb on + strandat 288.358 kb on + strand, within Psest_0272at 288.358 kb on + strand, within Psest_0272at 288.358 kb on + strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.814 kb on + strand, within Psest_0272at 288.814 kb on + strand, within Psest_0272at 288.887 kb on - strand, within Psest_0272at 288.887 kb on - strand, within Psest_0272at 288.887 kb on - strand, within Psest_0272at 288.961 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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286,129 + -0.1
286,129 + -0.5
286,129 + +0.2
286,130 - +1.0
286,131 + -1.1
286,131 + -1.2
286,131 + +0.7
286,131 + -0.0
286,131 + +0.2
286,131 + +0.1
286,132 - +1.9
286,358 - Psest_0270 0.25 +2.2
286,480 + Psest_0270 0.38 +0.1
286,480 + Psest_0270 0.38 -0.3
286,480 + Psest_0270 0.38 +1.9
286,480 + Psest_0270 0.38 +0.7
286,480 + Psest_0270 0.38 +1.5
286,480 + Psest_0270 0.38 +1.0
286,480 + Psest_0270 0.38 +1.5
286,480 + Psest_0270 0.38 +0.8
286,480 + Psest_0270 0.38 +1.2
286,480 + Psest_0270 0.38 +0.6
286,481 - Psest_0270 0.38 +0.8
286,481 - Psest_0270 0.38 +2.0
286,481 - Psest_0270 0.38 +2.3
286,481 - Psest_0270 0.38 +1.4
286,481 - Psest_0270 0.38 +0.8
286,481 - Psest_0270 0.38 +2.8
286,481 - Psest_0270 0.38 +2.0
286,481 - Psest_0270 0.38 +2.2
286,481 - Psest_0270 0.38 +2.7
286,481 - Psest_0270 0.38 +2.3
286,481 - Psest_0270 0.38 +1.1
286,482 + Psest_0270 0.38 -0.1
286,482 + Psest_0270 0.38 +1.2
286,483 - Psest_0270 0.38 +0.3
286,483 - Psest_0270 0.38 +1.7
286,483 - Psest_0270 0.38 +2.6
286,483 - Psest_0270 0.38 +3.1
286,483 - Psest_0270 0.38 +1.9
286,798 + Psest_0270 0.73 +1.1
286,799 - Psest_0270 0.73 +0.9
286,799 - Psest_0270 0.73 +0.3
286,799 - Psest_0270 0.73 +0.9
286,799 - Psest_0270 0.73 +0.9
286,799 - Psest_0270 0.73 +0.7
286,851 + Psest_0270 0.78 -1.3
286,851 + Psest_0270 0.78 +0.6
286,852 - Psest_0270 0.78 +1.7
286,852 - Psest_0270 0.78 +1.4
286,852 - Psest_0270 0.78 -0.6
286,861 + Psest_0270 0.79 +1.9
286,861 + Psest_0270 0.79 +0.9
286,862 - Psest_0270 0.79 +0.2
286,862 - Psest_0270 0.79 +1.5
286,862 - Psest_0270 0.79 +1.1
286,862 - Psest_0270 0.79 +0.8
287,037 + -1.2
287,038 - +0.2
287,174 + -0.0
287,174 + +1.2
287,175 - +2.8
287,214 + Psest_0271 0.13 +1.0
287,393 + Psest_0271 0.31 +0.8
287,393 + Psest_0271 0.31 +1.8
287,393 + Psest_0271 0.31 +1.4
287,393 + Psest_0271 0.31 +1.7
287,393 + Psest_0271 0.31 +0.8
287,393 + Psest_0271 0.31 +0.4
287,393 + Psest_0271 0.31 +0.9
287,393 + Psest_0271 0.31 +0.6
287,393 + Psest_0271 0.31 +1.7
287,394 - Psest_0271 0.31 +0.6
287,394 - Psest_0271 0.31 -0.5
287,394 - Psest_0271 0.31 -2.2
287,394 - Psest_0271 0.31 -0.4
287,394 - Psest_0271 0.31 -1.0
287,394 - Psest_0271 0.31 +1.2
287,394 - Psest_0271 0.31 +0.1
287,394 - Psest_0271 0.31 +1.1
287,394 - Psest_0271 0.31 +0.6
287,582 - Psest_0271 0.50 +0.1
287,611 - Psest_0271 0.52 -0.1
287,616 + Psest_0271 0.53 +1.0
287,616 + Psest_0271 0.53 +1.4
287,617 - Psest_0271 0.53 -0.1
287,617 - Psest_0271 0.53 -0.2
287,691 + Psest_0271 0.60 +1.7
287,692 - Psest_0271 0.60 +0.1
287,692 - Psest_0271 0.60 -0.6
287,772 + Psest_0271 0.68 +1.1
287,773 - Psest_0271 0.68 +0.5
287,773 - Psest_0271 0.68 -0.1
287,788 - Psest_0271 0.70 -0.2
287,788 - Psest_0271 0.70 +1.1
287,788 - Psest_0271 0.70 -0.8
287,861 - Psest_0271 0.77 +2.0
287,862 + Psest_0271 0.77 +0.1
287,862 + Psest_0271 0.77 +1.2
287,862 + Psest_0271 0.77 +1.4
287,862 + Psest_0271 0.77 +1.1
287,862 + Psest_0271 0.77 -0.2
287,862 + Psest_0271 0.77 +0.7
287,862 + Psest_0271 0.77 +1.4
287,862 + Psest_0271 0.77 +0.3
287,862 + Psest_0271 0.77 +1.4
287,862 + Psest_0271 0.77 +1.6
287,862 + Psest_0271 0.77 +0.9
287,863 - Psest_0271 0.77 -0.7
287,863 - Psest_0271 0.77 -0.1
287,863 - Psest_0271 0.77 +0.8
287,863 - Psest_0271 0.77 -0.4
287,863 - Psest_0271 0.77 +0.4
287,863 - Psest_0271 0.77 -0.7
287,863 - Psest_0271 0.77 -2.2
287,863 - Psest_0271 0.77 -1.0
287,863 - Psest_0271 0.77 -0.5
287,863 - Psest_0271 0.77 -0.7
287,985 + Psest_0271 0.89 +0.0
287,985 + Psest_0271 0.89 +1.2
287,985 + Psest_0271 0.89 +0.9
287,985 + Psest_0271 0.89 +1.8
287,985 + Psest_0271 0.89 +0.9
287,986 - Psest_0271 0.90 -0.1
287,986 - Psest_0271 0.90 -0.7
287,986 - Psest_0271 0.90 +0.8
288,024 + +2.1
288,079 + +2.4
288,148 + +0.5
288,149 - +2.5
288,230 + +2.3
288,358 + Psest_0272 0.17 +0.8
288,358 + Psest_0272 0.17 +0.5
288,358 + Psest_0272 0.17 +0.3
288,359 - Psest_0272 0.17 +0.8
288,359 - Psest_0272 0.17 -1.1
288,359 - Psest_0272 0.17 +0.1
288,359 - Psest_0272 0.17 -0.9
288,359 - Psest_0272 0.17 +0.8
288,814 + Psest_0272 0.53 -2.3
288,814 + Psest_0272 0.53 -0.7
288,887 - Psest_0272 0.59 -0.7
288,887 - Psest_0272 0.59 +0.2
288,887 - Psest_0272 0.59 -1.1
288,961 + Psest_0272 0.65 +1.1
289,080 + Psest_0272 0.75 +2.3
289,080 + Psest_0272 0.75 -0.1
289,080 + Psest_0272 0.75 +1.6
289,080 + Psest_0272 0.75 +2.5
289,080 + Psest_0272 0.75 +0.3
289,080 + Psest_0272 0.75 +0.4
289,080 + Psest_0272 0.75 +1.2
289,081 - Psest_0272 0.75 +0.9
289,081 - Psest_0272 0.75 +1.5
289,081 - Psest_0272 0.75 +0.6
289,081 - Psest_0272 0.75 +0.3
289,081 - Psest_0272 0.75 +1.0
289,081 - Psest_0272 0.75 +0.4
289,081 - Psest_0272 0.75 -0.6
289,081 - Psest_0272 0.75 -0.4

Or see this region's nucleotide sequence