Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2616 and HP15_2617 are separated by 72 nucleotides HP15_2617 and HP15_2618 are separated by 61 nucleotides HP15_2618 and HP15_2619 are separated by 207 nucleotides
HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227
_2616
HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890
_2617
HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152
_2618
HP15_2619: HP15_2619 - conserved hypothetical protein, secreted, at 2,770,360 to 2,771,129
_2619
Position (kb)
2769
2770 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2768.327 kb on + strand, within HP15_2616 at 2768.327 kb on + strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.335 kb on - strand, within HP15_2616 at 2768.340 kb on - strand, within HP15_2616 at 2768.346 kb on - strand, within HP15_2616 at 2768.400 kb on - strand, within HP15_2616 at 2768.412 kb on - strand, within HP15_2616 at 2768.437 kb on + strand, within HP15_2616 at 2768.472 kb on - strand, within HP15_2616 at 2768.513 kb on - strand, within HP15_2616 at 2768.517 kb on - strand, within HP15_2616 at 2768.537 kb on + strand, within HP15_2616 at 2768.627 kb on + strand, within HP15_2616 at 2768.841 kb on - strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.856 kb on + strand, within HP15_2616 at 2768.927 kb on + strand, within HP15_2616 at 2768.947 kb on + strand, within HP15_2616 at 2769.042 kb on + strand, within HP15_2616 at 2769.092 kb on + strand, within HP15_2616 at 2769.154 kb on + strand at 2769.228 kb on + strand at 2769.351 kb on - strand at 2769.351 kb on - strand at 2769.387 kb on + strand, within HP15_2617 at 2769.405 kb on - strand, within HP15_2617 at 2769.649 kb on + strand, within HP15_2617 at 2769.707 kb on + strand, within HP15_2617 at 2769.795 kb on - strand, within HP15_2617 at 2770.086 kb on - strand, within HP15_2618 at 2770.088 kb on - strand, within HP15_2618 at 2770.280 kb on + strand at 2770.459 kb on + strand, within HP15_2619 at 2770.563 kb on - strand, within HP15_2619 at 2770.590 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.834 kb on - strand, within HP15_2619 at 2770.879 kb on - strand, within HP15_2619
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,768,327 + HP15_2616 0.27 +0.8 2,768,327 + HP15_2616 0.27 -1.6 2,768,335 - HP15_2616 0.27 -0.5 2,768,335 - HP15_2616 0.27 +0.1 2,768,335 - HP15_2616 0.27 -0.9 2,768,340 - HP15_2616 0.28 -1.8 2,768,346 - HP15_2616 0.28 -0.3 2,768,400 - HP15_2616 0.33 -0.7 2,768,412 - HP15_2616 0.33 +0.0 2,768,437 + HP15_2616 0.36 -0.8 2,768,472 - HP15_2616 0.38 -1.9 2,768,513 - HP15_2616 0.42 -0.9 2,768,517 - HP15_2616 0.42 -2.9 2,768,537 + HP15_2616 0.44 -0.1 2,768,627 + HP15_2616 0.51 -0.1 2,768,841 - HP15_2616 0.68 +0.0 2,768,856 + HP15_2616 0.70 +0.4 2,768,856 + HP15_2616 0.70 +0.7 2,768,856 + HP15_2616 0.70 -0.2 2,768,927 + HP15_2616 0.75 +0.0 2,768,947 + HP15_2616 0.77 -0.1 2,769,042 + HP15_2616 0.85 -0.7 2,769,092 + HP15_2616 0.89 -0.0 2,769,154 + -0.4 2,769,228 + +0.3 2,769,351 - -1.3 2,769,351 - +1.7 2,769,387 + HP15_2617 0.15 +2.7 2,769,405 - HP15_2617 0.18 -0.7 2,769,649 + HP15_2617 0.59 +0.9 2,769,707 + HP15_2617 0.69 -0.7 2,769,795 - HP15_2617 0.84 +0.4 2,770,086 - HP15_2618 0.67 -0.3 2,770,088 - HP15_2618 0.68 -1.6 2,770,280 + -2.8 2,770,459 + HP15_2619 0.13 -2.2 2,770,563 - HP15_2619 0.26 -3.1 2,770,590 - HP15_2619 0.30 +0.5 2,770,710 - HP15_2619 0.45 -2.2 2,770,710 - HP15_2619 0.45 -2.6 2,770,710 - HP15_2619 0.45 -1.3 2,770,834 - HP15_2619 0.62 -0.3 2,770,879 - HP15_2619 0.67 -1.3
Or see this region's nucleotide sequence