Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25780

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
2,687,072	-				-0.7
2,687,072	-				+1.4
2,687,072	-				-1.0
2,687,094	-				-2.4
2,687,109	+				-1.6
2,687,156	+				-1.9
2,687,181	+				-0.6
2,687,181	+				+0.2
2,687,181	+				-1.6
2,687,181	+				+0.0
2,687,188	-				+0.6
2,687,188	-				-2.3
2,687,189	-				+1.4
2,687,193	-				+2.2
2,687,203	-				+0.2
2,687,208	-				+1.0
2,687,229	-				-2.3
2,687,317	+				+0.3
2,687,355	+				-1.2
2,687,382	+				+0.8
2,687,459	-				+1.8
2,687,460	+				-1.2
2,687,460	+				-1.6
2,687,468	-				-1.4
2,687,537	+				+1.7
2,687,542	+				+1.0
2,687,542	+				+1.4
2,687,542	+				-1.7
2,687,542	+				-3.6
2,687,542	+				+1.8
2,687,542	+				-1.4
2,687,542	+				+0.1
2,687,542	+				+0.3
2,687,542	+				+0.9
2,687,550	-				+2.4
2,687,550	-				-0.7
2,687,550	-				+1.4
2,687,550	-				+1.1
2,687,550	-				-0.2
2,687,562	-				-2.5
2,687,604	+				+0.2
2,687,612	-				-0.7
2,687,656	+				+0.6
2,687,668	+				-0.2
2,687,716	-				-0.9
2,687,716	-				-1.7
2,687,723	+				+0.2
2,687,723	+				+1.0
2,687,728	+				-1.6
2,687,728	+				-2.0
2,687,731	-				-0.7
2,687,784	+				-2.0
2,687,784	+				+0.2
2,687,784	+				+1.2
2,687,827	-				-2.8
2,687,829	+				-1.7
2,687,837	-				-1.9
2,687,858	+				+0.4
2,687,866	-				+1.2
2,687,866	-				+1.2
2,687,866	-				+0.8
2,687,875	+				-2.9
2,687,877	-				+1.1
2,687,895	+				+1.5
2,687,923	-				+1.1
2,687,924	+				-0.2
2,687,968	+				-3.8
2,687,978	-				-0.4
2,687,990	+				+0.2
2,688,020	+				-2.4
2,688,020	+				-1.9
2,688,020	+				-2.8
2,688,026	-				-0.6
2,688,028	-				-0.1
2,688,028	-				+1.1
2,688,028	-				-0.7
2,688,028	-				-0.9
2,688,033	+				-2.2
2,688,033	+				-0.5
2,688,038	+				-2.4
2,688,043	+				-0.7
2,688,094	-				-2.8
2,688,097	+				+0.6
2,688,097	+				+2.6
2,688,097	+				+1.9
2,688,097	+				+2.1
2,688,097	+				-0.9
2,688,097	+				-1.0
2,688,097	+				-1.9
2,688,097	+				+0.6
2,688,097	+				+0.0
2,688,097	+				-0.3
2,688,097	+				+1.9
2,688,097	+				+2.2
2,688,097	+				+0.3
2,688,097	+				+0.7
2,688,097	+				-2.0
2,688,097	+				-1.9
2,688,097	+				-2.8
2,688,097	+				-0.7
2,688,097	+				-0.9
2,688,097	+				+2.4
2,688,097	+				+1.2
2,688,105	-				+0.6
2,688,105	-				-0.4
2,688,105	-				-3.7
2,688,105	-				-2.0
2,688,105	-				-0.9
2,688,105	-				+0.0
2,688,105	-				-1.3
2,688,105	-				+1.4
2,688,105	-				+1.2
2,688,105	-				+2.0
2,688,105	-				-3.6
2,688,105	-				-1.4
2,688,105	-				+0.7
2,688,105	-				+0.5
2,688,105	-				+1.7
2,688,105	-				-0.1
2,688,105	-				+0.2
2,688,105	-				-1.3
2,688,105	-				+0.3
2,688,105	-				-1.6
2,688,105	-				+0.4
2,688,105	-				+0.4
2,688,105	-				+0.3
2,688,105	-				+0.5
2,688,105	-				-0.5
2,688,105	-				+1.3
2,688,105	-				-2.5
2,688,105	-				+0.2
2,688,105	-				-1.9
2,688,105	-				+0.6
2,688,115	-				+0.5
2,688,121	+				-1.0
2,688,143	-				-0.6
2,688,145	+				+0.2
2,688,152	+				+1.2
2,688,152	+				-0.4
2,688,155	-				-0.2
2,688,158	+				+0.5
2,688,160	-				-1.9
2,688,168	+				-1.6
2,688,168	+				-0.8
2,688,228	-				+1.9
2,688,231	+				+1.8
2,688,231	+				-2.5
2,688,251	-				+2.6
2,688,253	-				-2.4
2,688,253	-				+1.4
2,688,375	+		PGA1_c25780	0.16	+0.1
2,688,375	+		PGA1_c25780	0.16	-2.4
2,688,383	-		PGA1_c25780	0.17	+0.9
2,688,383	-		PGA1_c25780	0.17	-2.7
2,688,383	-		PGA1_c25780	0.17	+0.0
2,688,383	-		PGA1_c25780	0.17	+0.8
2,688,491	-		PGA1_c25780	0.23	-0.6
2,688,529	+		PGA1_c25780	0.25	-0.2
2,688,555	-		PGA1_c25780	0.26	-2.0
2,688,565	+		PGA1_c25780	0.27	-1.7
2,688,683	+		PGA1_c25780	0.33	-0.4
2,688,691	-		PGA1_c25780	0.33	-2.5
2,688,806	-		PGA1_c25780	0.39	+0.2
2,688,813	-		PGA1_c25780	0.40	+2.0
2,688,818	-		PGA1_c25780	0.40	-0.2
2,688,853	-		PGA1_c25780	0.42	-0.4
2,688,906	+		PGA1_c25780	0.45	+0.2
2,688,906	+		PGA1_c25780	0.45	+0.8
2,688,906	+		PGA1_c25780	0.45	-2.0
2,689,057	-		PGA1_c25780	0.53	-0.4
2,689,141	+		PGA1_c25780	0.57	+0.6
2,689,146	-		PGA1_c25780	0.58	+1.2
2,689,200	+		PGA1_c25780	0.61	+0.4
2,689,219	+		PGA1_c25780	0.62	-0.0
2,689,237	+		PGA1_c25780	0.63	-0.8
2,689,237	+		PGA1_c25780	0.63	-2.4
2,689,288	-		PGA1_c25780	0.65	+1.4
2,689,319	-		PGA1_c25780	0.67	-0.1
2,689,378	+		PGA1_c25780	0.70	-1.7
2,689,383	+		PGA1_c25780	0.70	-0.7
2,689,394	+		PGA1_c25780	0.71	+0.1
2,689,458	+		PGA1_c25780	0.74	-2.0
2,689,458	+		PGA1_c25780	0.74	-0.3
2,689,502	+		PGA1_c25780	0.77	-3.4
2,689,502	-		PGA1_c25780	0.77	-2.0
2,689,509	-		PGA1_c25780	0.77	-1.9
2,689,574	-		PGA1_c25780	0.81	+1.4
2,689,610	+		PGA1_c25780	0.83	+0.8
2,689,634	-		PGA1_c25780	0.84	-0.8
2,689,634	-		PGA1_c25780	0.84	+1.1
2,689,634	-		PGA1_c25780	0.84	+0.3
2,689,660	+		PGA1_c25780	0.85	-0.2
2,689,665	+		PGA1_c25780	0.85	-0.0
2,689,711	-		PGA1_c25780	0.88	-0.6
2,689,724	+		PGA1_c25780	0.89	-2.3
2,689,729	+		PGA1_c25780	0.89	-0.7
2,689,776	-				+0.5
2,689,802	+				-1.0
2,689,802	+				+0.4
2,689,803	+				+0.6
2,689,810	-				+0.3
2,689,810	-				+2.1
2,689,810	-				+0.8
2,689,842	+				-0.1
2,689,844	-				+1.6
2,689,902	+				-0.3
2,689,948	-				+1.4
2,689,964	-				-0.9
2,689,970	+				-2.6
2,689,980	-				+0.6
2,690,002	-				+0.6
2,690,020	-				+1.0
2,690,041	-				+0.3
2,690,061	+				-3.5
2,690,091	-				+1.2
2,690,116	-				+3.1
2,690,135	-				+1.8
2,690,142	+				-2.5
2,690,150	-				-0.6
2,690,152	+				-1.5
2,690,156	+				+1.7
2,690,156	+				+0.5
2,690,156	+				+0.5
2,690,191	+				-2.0
2,690,225	-				+1.9
2,690,269	-				+0.3
2,690,351	+				+3.0
2,690,359	-				+0.4
2,690,360	+				-3.0
2,690,368	-				-0.6
2,690,368	-				-1.5
2,690,368	-				-2.8
2,690,396	-				-1.6
2,690,399	+				+0.5
2,690,399	+				-0.5
2,690,407	-				-1.6
2,690,478	-				-2.8
2,690,553	-		PGA1_c25800	0.11	+1.9
2,690,602	-		PGA1_c25800	0.15	-0.5
2,690,608	+		PGA1_c25800	0.15	-1.4
2,690,695	-		PGA1_c25800	0.22	+0.4
2,690,754	+		PGA1_c25800	0.27	-0.2
2,690,779	-		PGA1_c25800	0.29	+1.2
2,690,832	+		PGA1_c25800	0.34	-0.7
2,690,840	-		PGA1_c25800	0.34	+1.1
2,690,872	-		PGA1_c25800	0.37	-0.6
2,690,915	-		PGA1_c25800	0.40	-1.3