Strain Fitness in Marinobacter adhaerens HP15 around HP15_2378

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2377 and HP15_2378 are separated by 3 nucleotidesHP15_2378 and HP15_2379 are separated by 36 nucleotidesHP15_2379 and HP15_2380 are separated by 142 nucleotides HP15_2377: HP15_2377 - response regulator receiver protein, at 2,505,982 to 2,507,010 _2377 HP15_2378: HP15_2378 - sensory box/GGDEF family protein, at 2,507,014 to 2,507,967 _2378 HP15_2379: HP15_2379 - transcriptional regulator MvaT, P16 subunit, at 2,508,004 to 2,508,372 _2379 HP15_2380: HP15_2380 - metallo-beta-lactamase family protein, at 2,508,515 to 2,509,906 _2380 Position (kb) 2507 2508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2506.015 kb on + strandat 2506.047 kb on + strandat 2506.141 kb on + strand, within HP15_2377at 2506.305 kb on - strand, within HP15_2377at 2506.337 kb on + strand, within HP15_2377at 2506.354 kb on - strand, within HP15_2377at 2506.372 kb on + strand, within HP15_2377at 2506.475 kb on + strand, within HP15_2377at 2506.547 kb on + strand, within HP15_2377at 2506.611 kb on + strand, within HP15_2377at 2506.746 kb on + strand, within HP15_2377at 2506.758 kb on + strand, within HP15_2377at 2506.816 kb on - strand, within HP15_2377at 2506.825 kb on + strand, within HP15_2377at 2506.826 kb on - strand, within HP15_2377at 2506.869 kb on - strand, within HP15_2377at 2506.913 kb on + strandat 2506.943 kb on + strandat 2507.206 kb on + strand, within HP15_2378at 2507.247 kb on + strand, within HP15_2378at 2507.270 kb on + strand, within HP15_2378at 2507.365 kb on + strand, within HP15_2378at 2507.378 kb on + strand, within HP15_2378at 2507.433 kb on - strand, within HP15_2378at 2507.472 kb on - strand, within HP15_2378at 2507.571 kb on + strand, within HP15_2378at 2507.573 kb on + strand, within HP15_2378at 2507.795 kb on + strand, within HP15_2378at 2507.795 kb on + strand, within HP15_2378at 2507.795 kb on + strand, within HP15_2378at 2507.796 kb on - strand, within HP15_2378at 2507.803 kb on - strand, within HP15_2378at 2507.803 kb on - strand, within HP15_2378at 2507.820 kb on - strand, within HP15_2378at 2507.830 kb on - strand, within HP15_2378at 2507.862 kb on - strand, within HP15_2378at 2507.959 kb on - strandat 2507.963 kb on - strandat 2507.986 kb on + strandat 2508.000 kb on + strandat 2508.005 kb on - strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.086 kb on + strand, within HP15_2379at 2508.673 kb on + strand, within HP15_2380at 2508.800 kb on - strand, within HP15_2380at 2508.904 kb on + strand, within HP15_2380at 2508.943 kb on - strand, within HP15_2380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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2,506,015 + -0.9
2,506,047 + -1.5
2,506,141 + HP15_2377 0.15 -1.4
2,506,305 - HP15_2377 0.31 +0.5
2,506,337 + HP15_2377 0.34 -0.1
2,506,354 - HP15_2377 0.36 -0.1
2,506,372 + HP15_2377 0.38 -1.7
2,506,475 + HP15_2377 0.48 -0.8
2,506,547 + HP15_2377 0.55 +1.1
2,506,611 + HP15_2377 0.61 +1.4
2,506,746 + HP15_2377 0.74 -0.6
2,506,758 + HP15_2377 0.75 +1.9
2,506,816 - HP15_2377 0.81 +0.9
2,506,825 + HP15_2377 0.82 -0.3
2,506,826 - HP15_2377 0.82 -1.2
2,506,869 - HP15_2377 0.86 +0.6
2,506,913 + -0.5
2,506,943 + +3.3
2,507,206 + HP15_2378 0.20 -2.3
2,507,247 + HP15_2378 0.24 +1.4
2,507,270 + HP15_2378 0.27 -0.4
2,507,365 + HP15_2378 0.37 -2.3
2,507,378 + HP15_2378 0.38 -2.8
2,507,433 - HP15_2378 0.44 -1.1
2,507,472 - HP15_2378 0.48 -3.2
2,507,571 + HP15_2378 0.58 +0.2
2,507,573 + HP15_2378 0.59 -0.9
2,507,795 + HP15_2378 0.82 -0.1
2,507,795 + HP15_2378 0.82 -0.1
2,507,795 + HP15_2378 0.82 +1.2
2,507,796 - HP15_2378 0.82 +4.1
2,507,803 - HP15_2378 0.83 -0.1
2,507,803 - HP15_2378 0.83 -1.0
2,507,820 - HP15_2378 0.84 +1.6
2,507,830 - HP15_2378 0.86 +1.6
2,507,862 - HP15_2378 0.89 +0.6
2,507,959 - -0.8
2,507,963 - -0.4
2,507,986 + +1.8
2,508,000 + -1.1
2,508,005 - -0.2
2,508,019 + +0.7
2,508,019 + +2.8
2,508,019 + +2.7
2,508,019 + +2.7
2,508,019 + +3.8
2,508,086 + HP15_2379 0.22 +1.9
2,508,673 + HP15_2380 0.11 +0.7
2,508,800 - HP15_2380 0.20 +2.5
2,508,904 + HP15_2380 0.28 -2.1
2,508,943 - HP15_2380 0.31 +0.7

Or see this region's nucleotide sequence