Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2195 and HP15_2196 are separated by 90 nucleotides HP15_2196 and HP15_2197 are separated by 243 nucleotides
HP15_2195: HP15_2195 - amino acid ABC transporter, permease protein, at 2,312,058 to 2,313,245
_2195
HP15_2196: HP15_2196 - glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein, at 2,313,336 to 2,314,379
_2196
HP15_2197: HP15_2197 - conserved hypothetical protein, secreted, at 2,314,623 to 2,315,510
_2197
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2312.343 kb on + strand, within HP15_2195 at 2312.351 kb on - strand, within HP15_2195 at 2312.358 kb on - strand, within HP15_2195 at 2312.366 kb on - strand, within HP15_2195 at 2312.446 kb on - strand, within HP15_2195 at 2312.453 kb on - strand, within HP15_2195 at 2312.857 kb on + strand, within HP15_2195 at 2312.973 kb on + strand, within HP15_2195 at 2313.144 kb on - strand at 2313.144 kb on - strand at 2313.202 kb on + strand at 2313.210 kb on - strand at 2313.210 kb on - strand at 2313.269 kb on + strand at 2313.335 kb on - strand at 2313.381 kb on - strand at 2313.508 kb on + strand, within HP15_2196 at 2313.583 kb on - strand, within HP15_2196 at 2313.604 kb on + strand, within HP15_2196 at 2313.604 kb on - strand, within HP15_2196 at 2313.702 kb on + strand, within HP15_2196 at 2313.779 kb on - strand, within HP15_2196 at 2313.801 kb on + strand, within HP15_2196 at 2313.803 kb on + strand, within HP15_2196 at 2313.803 kb on + strand, within HP15_2196 at 2313.823 kb on - strand, within HP15_2196 at 2313.932 kb on + strand, within HP15_2196 at 2313.980 kb on - strand, within HP15_2196 at 2314.029 kb on + strand, within HP15_2196 at 2314.105 kb on - strand, within HP15_2196 at 2314.105 kb on - strand, within HP15_2196 at 2314.316 kb on - strand at 2314.524 kb on - strand at 2314.797 kb on - strand, within HP15_2197 at 2314.827 kb on + strand, within HP15_2197 at 2314.830 kb on - strand, within HP15_2197 at 2314.830 kb on - strand, within HP15_2197 at 2314.981 kb on - strand, within HP15_2197 at 2315.366 kb on - strand, within HP15_2197
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,312,343 + HP15_2195 0.24 -1.1 2,312,351 - HP15_2195 0.25 -0.2 2,312,358 - HP15_2195 0.25 +0.5 2,312,366 - HP15_2195 0.26 +1.5 2,312,446 - HP15_2195 0.33 -0.1 2,312,453 - HP15_2195 0.33 +0.8 2,312,857 + HP15_2195 0.67 -1.6 2,312,973 + HP15_2195 0.77 +1.0 2,313,144 - -0.4 2,313,144 - -0.7 2,313,202 + -1.8 2,313,210 - -1.0 2,313,210 - +0.4 2,313,269 + +0.8 2,313,335 - -3.3 2,313,381 - -1.5 2,313,508 + HP15_2196 0.16 -1.5 2,313,583 - HP15_2196 0.24 +1.9 2,313,604 + HP15_2196 0.26 -1.6 2,313,604 - HP15_2196 0.26 -0.3 2,313,702 + HP15_2196 0.35 +0.5 2,313,779 - HP15_2196 0.42 -0.0 2,313,801 + HP15_2196 0.45 -1.5 2,313,803 + HP15_2196 0.45 +1.2 2,313,803 + HP15_2196 0.45 -1.4 2,313,823 - HP15_2196 0.47 +0.5 2,313,932 + HP15_2196 0.57 -0.0 2,313,980 - HP15_2196 0.62 -1.2 2,314,029 + HP15_2196 0.66 -0.2 2,314,105 - HP15_2196 0.74 -0.5 2,314,105 - HP15_2196 0.74 -1.0 2,314,316 - -2.5 2,314,524 - -0.3 2,314,797 - HP15_2197 0.20 -1.1 2,314,827 + HP15_2197 0.23 -2.7 2,314,830 - HP15_2197 0.23 -0.6 2,314,830 - HP15_2197 0.23 +1.5 2,314,981 - HP15_2197 0.40 -0.7 2,315,366 - HP15_2197 0.84 -0.0
Or see this region's nucleotide sequence