Strain Fitness in Marinobacter adhaerens HP15 around HP15_2134

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2133 and HP15_2134 are separated by 24 nucleotidesHP15_2134 and HP15_2135 are separated by 2 nucleotidesHP15_2135 and HP15_2136 overlap by 4 nucleotides HP15_2133: HP15_2133 - solute symporter-like protein, at 2,234,721 to 2,236,085 _2133 HP15_2134: HP15_2134 - conserved hypothetical protein, at 2,236,110 to 2,237,111 _2134 HP15_2135: HP15_2135 - biopolymer transport protein ExbD/TolR, at 2,237,114 to 2,237,614 _2135 HP15_2136: HP15_2136 - biopolymer transport protein ExbD/TolR, at 2,237,611 to 2,238,057 _2136 Position (kb) 2236 2237 2238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2235.212 kb on + strand, within HP15_2133at 2235.559 kb on + strand, within HP15_2133at 2235.572 kb on - strand, within HP15_2133at 2235.607 kb on - strand, within HP15_2133at 2235.622 kb on - strand, within HP15_2133at 2235.633 kb on + strand, within HP15_2133at 2235.738 kb on + strand, within HP15_2133at 2235.858 kb on - strand, within HP15_2133at 2235.897 kb on + strand, within HP15_2133at 2236.031 kb on + strandat 2236.036 kb on + strandat 2236.054 kb on - strandat 2236.054 kb on - strandat 2236.193 kb on - strandat 2236.264 kb on - strand, within HP15_2134at 2236.283 kb on + strand, within HP15_2134at 2236.443 kb on - strand, within HP15_2134at 2236.463 kb on - strand, within HP15_2134at 2236.496 kb on + strand, within HP15_2134at 2236.660 kb on + strand, within HP15_2134at 2236.699 kb on + strand, within HP15_2134at 2236.834 kb on + strand, within HP15_2134at 2236.834 kb on + strand, within HP15_2134at 2236.842 kb on - strand, within HP15_2134at 2236.985 kb on + strand, within HP15_2134at 2237.224 kb on + strand, within HP15_2135at 2237.263 kb on + strand, within HP15_2135at 2237.312 kb on + strand, within HP15_2135at 2237.318 kb on - strand, within HP15_2135at 2237.338 kb on - strand, within HP15_2135at 2237.402 kb on - strand, within HP15_2135at 2237.406 kb on - strand, within HP15_2135at 2237.459 kb on - strand, within HP15_2135at 2237.495 kb on - strand, within HP15_2135at 2237.706 kb on + strand, within HP15_2136at 2237.831 kb on + strand, within HP15_2136at 2237.839 kb on - strand, within HP15_2136at 2238.002 kb on + strand, within HP15_2136at 2238.002 kb on + strand, within HP15_2136at 2238.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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2,235,212 + HP15_2133 0.36 -0.9
2,235,559 + HP15_2133 0.61 -2.3
2,235,572 - HP15_2133 0.62 +1.7
2,235,607 - HP15_2133 0.65 -0.4
2,235,622 - HP15_2133 0.66 -4.0
2,235,633 + HP15_2133 0.67 +0.2
2,235,738 + HP15_2133 0.75 -0.4
2,235,858 - HP15_2133 0.83 -0.6
2,235,897 + HP15_2133 0.86 -0.1
2,236,031 + +2.2
2,236,036 + -0.1
2,236,054 - -2.3
2,236,054 - -1.2
2,236,193 - -0.1
2,236,264 - HP15_2134 0.15 -0.9
2,236,283 + HP15_2134 0.17 -1.0
2,236,443 - HP15_2134 0.33 -1.7
2,236,463 - HP15_2134 0.35 -1.5
2,236,496 + HP15_2134 0.39 -2.4
2,236,660 + HP15_2134 0.55 -2.1
2,236,699 + HP15_2134 0.59 -0.3
2,236,834 + HP15_2134 0.72 -2.0
2,236,834 + HP15_2134 0.72 -0.9
2,236,842 - HP15_2134 0.73 -1.5
2,236,985 + HP15_2134 0.87 -0.9
2,237,224 + HP15_2135 0.22 +0.1
2,237,263 + HP15_2135 0.30 +1.5
2,237,312 + HP15_2135 0.40 +1.9
2,237,318 - HP15_2135 0.41 -2.8
2,237,338 - HP15_2135 0.45 +0.5
2,237,402 - HP15_2135 0.57 -2.4
2,237,406 - HP15_2135 0.58 -0.5
2,237,459 - HP15_2135 0.69 +0.3
2,237,495 - HP15_2135 0.76 -1.5
2,237,706 + HP15_2136 0.21 +0.9
2,237,831 + HP15_2136 0.49 -2.4
2,237,839 - HP15_2136 0.51 -0.1
2,238,002 + HP15_2136 0.87 +0.5
2,238,002 + HP15_2136 0.87 +0.8
2,238,061 - +0.9

Or see this region's nucleotide sequence