Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2133 and HP15_2134 are separated by 24 nucleotides HP15_2134 and HP15_2135 are separated by 2 nucleotides HP15_2135 and HP15_2136 overlap by 4 nucleotides
HP15_2133: HP15_2133 - solute symporter-like protein, at 2,234,721 to 2,236,085
_2133
HP15_2134: HP15_2134 - conserved hypothetical protein, at 2,236,110 to 2,237,111
_2134
HP15_2135: HP15_2135 - biopolymer transport protein ExbD/TolR, at 2,237,114 to 2,237,614
_2135
HP15_2136: HP15_2136 - biopolymer transport protein ExbD/TolR, at 2,237,611 to 2,238,057
_2136
Position (kb)
2236
2237
2238 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2235.212 kb on + strand, within HP15_2133 at 2235.559 kb on + strand, within HP15_2133 at 2235.572 kb on - strand, within HP15_2133 at 2235.607 kb on - strand, within HP15_2133 at 2235.622 kb on - strand, within HP15_2133 at 2235.633 kb on + strand, within HP15_2133 at 2235.738 kb on + strand, within HP15_2133 at 2235.858 kb on - strand, within HP15_2133 at 2235.897 kb on + strand, within HP15_2133 at 2236.031 kb on + strand at 2236.036 kb on + strand at 2236.054 kb on - strand at 2236.054 kb on - strand at 2236.193 kb on - strand at 2236.264 kb on - strand, within HP15_2134 at 2236.283 kb on + strand, within HP15_2134 at 2236.443 kb on - strand, within HP15_2134 at 2236.463 kb on - strand, within HP15_2134 at 2236.496 kb on + strand, within HP15_2134 at 2236.660 kb on + strand, within HP15_2134 at 2236.699 kb on + strand, within HP15_2134 at 2236.834 kb on + strand, within HP15_2134 at 2236.834 kb on + strand, within HP15_2134 at 2236.842 kb on - strand, within HP15_2134 at 2236.985 kb on + strand, within HP15_2134 at 2237.224 kb on + strand, within HP15_2135 at 2237.263 kb on + strand, within HP15_2135 at 2237.312 kb on + strand, within HP15_2135 at 2237.318 kb on - strand, within HP15_2135 at 2237.338 kb on - strand, within HP15_2135 at 2237.402 kb on - strand, within HP15_2135 at 2237.406 kb on - strand, within HP15_2135 at 2237.459 kb on - strand, within HP15_2135 at 2237.495 kb on - strand, within HP15_2135 at 2237.706 kb on + strand, within HP15_2136 at 2237.831 kb on + strand, within HP15_2136 at 2237.839 kb on - strand, within HP15_2136 at 2238.002 kb on + strand, within HP15_2136 at 2238.002 kb on + strand, within HP15_2136 at 2238.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,235,212 + HP15_2133 0.36 -0.9 2,235,559 + HP15_2133 0.61 -2.3 2,235,572 - HP15_2133 0.62 +1.7 2,235,607 - HP15_2133 0.65 -0.4 2,235,622 - HP15_2133 0.66 -4.0 2,235,633 + HP15_2133 0.67 +0.2 2,235,738 + HP15_2133 0.75 -0.4 2,235,858 - HP15_2133 0.83 -0.6 2,235,897 + HP15_2133 0.86 -0.1 2,236,031 + +2.2 2,236,036 + -0.1 2,236,054 - -2.3 2,236,054 - -1.2 2,236,193 - -0.1 2,236,264 - HP15_2134 0.15 -0.9 2,236,283 + HP15_2134 0.17 -1.0 2,236,443 - HP15_2134 0.33 -1.7 2,236,463 - HP15_2134 0.35 -1.5 2,236,496 + HP15_2134 0.39 -2.4 2,236,660 + HP15_2134 0.55 -2.1 2,236,699 + HP15_2134 0.59 -0.3 2,236,834 + HP15_2134 0.72 -2.0 2,236,834 + HP15_2134 0.72 -0.9 2,236,842 - HP15_2134 0.73 -1.5 2,236,985 + HP15_2134 0.87 -0.9 2,237,224 + HP15_2135 0.22 +0.1 2,237,263 + HP15_2135 0.30 +1.5 2,237,312 + HP15_2135 0.40 +1.9 2,237,318 - HP15_2135 0.41 -2.8 2,237,338 - HP15_2135 0.45 +0.5 2,237,402 - HP15_2135 0.57 -2.4 2,237,406 - HP15_2135 0.58 -0.5 2,237,459 - HP15_2135 0.69 +0.3 2,237,495 - HP15_2135 0.76 -1.5 2,237,706 + HP15_2136 0.21 +0.9 2,237,831 + HP15_2136 0.49 -2.4 2,237,839 - HP15_2136 0.51 -0.1 2,238,002 + HP15_2136 0.87 +0.5 2,238,002 + HP15_2136 0.87 +0.8 2,238,061 - +0.9
Or see this region's nucleotide sequence