Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1967 and HP15_1968 are separated by 79 nucleotides HP15_1968 and HP15_1969 are separated by 116 nucleotides HP15_1969 and HP15_1970 are separated by 251 nucleotides
HP15_1967: HP15_1967 - phage terminase large subunit (GpA), at 2,084,180 to 2,086,012
_1967
HP15_1968: HP15_1968 - phage DNA packaging protein, Nu1 subunit of terminase, at 2,086,092 to 2,086,610
_1968
HP15_1969: HP15_1969 - hypothetical protein, at 2,086,727 to 2,086,831
_1969
HP15_1970: HP15_1970 - hypothetical protein, at 2,087,083 to 2,088,630
_1970
Position (kb)
2086
2087 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 2085.751 kb on + strand, within HP15_1967 at 2085.774 kb on - strand, within HP15_1967 at 2085.953 kb on + strand at 2085.981 kb on + strand at 2086.034 kb on + strand at 2086.034 kb on + strand at 2086.042 kb on - strand at 2086.058 kb on + strand at 2086.061 kb on - strand at 2086.116 kb on + strand at 2086.133 kb on + strand at 2086.133 kb on + strand at 2086.141 kb on - strand at 2086.291 kb on - strand, within HP15_1968 at 2086.329 kb on - strand, within HP15_1968 at 2086.387 kb on + strand, within HP15_1968 at 2086.507 kb on + strand, within HP15_1968 at 2086.644 kb on + strand at 2086.652 kb on - strand at 2086.652 kb on - strand at 2086.693 kb on + strand at 2086.788 kb on + strand, within HP15_1969 at 2086.815 kb on + strand, within HP15_1969 at 2086.833 kb on + strand at 2086.846 kb on - strand at 2086.847 kb on - strand at 2086.847 kb on - strand at 2086.926 kb on - strand at 2086.928 kb on + strand at 2087.053 kb on + strand at 2087.053 kb on + strand at 2087.075 kb on - strand at 2087.087 kb on - strand at 2087.108 kb on + strand at 2087.130 kb on - strand at 2087.140 kb on - strand at 2087.175 kb on + strand at 2087.175 kb on + strand at 2087.183 kb on - strand at 2087.183 kb on - strand at 2087.183 kb on - strand at 2087.183 kb on - strand at 2087.299 kb on + strand, within HP15_1970 at 2087.304 kb on + strand, within HP15_1970 at 2087.304 kb on + strand, within HP15_1970 at 2087.314 kb on - strand, within HP15_1970 at 2087.323 kb on + strand, within HP15_1970 at 2087.351 kb on - strand, within HP15_1970 at 2087.357 kb on - strand, within HP15_1970 at 2087.390 kb on + strand, within HP15_1970 at 2087.392 kb on + strand, within HP15_1970 at 2087.478 kb on - strand, within HP15_1970 at 2087.558 kb on - strand, within HP15_1970 at 2087.693 kb on + strand, within HP15_1970 at 2087.772 kb on + strand, within HP15_1970 at 2087.826 kb on - strand, within HP15_1970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,085,751 + HP15_1967 0.86 +1.8 2,085,774 - HP15_1967 0.87 +1.7 2,085,953 + +3.0 2,085,981 + +1.0 2,086,034 + +0.9 2,086,034 + -1.5 2,086,042 - +2.6 2,086,058 + +2.3 2,086,061 - +1.4 2,086,116 + +0.8 2,086,133 + +2.3 2,086,133 + +1.7 2,086,141 - +2.6 2,086,291 - HP15_1968 0.38 +5.0 2,086,329 - HP15_1968 0.46 +4.3 2,086,387 + HP15_1968 0.57 +3.3 2,086,507 + HP15_1968 0.80 +3.0 2,086,644 + +3.0 2,086,652 - +2.7 2,086,652 - -1.5 2,086,693 + +3.6 2,086,788 + HP15_1969 0.58 +2.8 2,086,815 + HP15_1969 0.84 +1.9 2,086,833 + +1.0 2,086,846 - +3.4 2,086,847 - +2.9 2,086,847 - +2.1 2,086,926 - +1.0 2,086,928 + +2.3 2,087,053 + -0.9 2,087,053 + +2.6 2,087,075 - +2.1 2,087,087 - +2.8 2,087,108 + +2.3 2,087,130 - +3.2 2,087,140 - +2.2 2,087,175 + +3.1 2,087,175 + +2.5 2,087,183 - +0.5 2,087,183 - +5.8 2,087,183 - +3.3 2,087,183 - +2.2 2,087,299 + HP15_1970 0.14 +2.8 2,087,304 + HP15_1970 0.14 +2.4 2,087,304 + HP15_1970 0.14 +4.7 2,087,314 - HP15_1970 0.15 +2.9 2,087,323 + HP15_1970 0.16 +1.9 2,087,351 - HP15_1970 0.17 +2.2 2,087,357 - HP15_1970 0.18 +2.7 2,087,390 + HP15_1970 0.20 +1.1 2,087,392 + HP15_1970 0.20 +0.4 2,087,478 - HP15_1970 0.26 +1.5 2,087,558 - HP15_1970 0.31 +1.9 2,087,693 + HP15_1970 0.39 +2.9 2,087,772 + HP15_1970 0.45 +2.8 2,087,826 - HP15_1970 0.48 +2.9
Or see this region's nucleotide sequence