Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1954 and HP15_1955 are separated by 44 nucleotides HP15_1955 and HP15_1956 are separated by 164 nucleotides HP15_1956 and HP15_1957 overlap by 4 nucleotides
HP15_1954: HP15_1954 - phage tail tape measure protein, family, at 2,072,584 to 2,075,346
_1954
HP15_1955: HP15_1955 - conserved hypothetical protein, secreted, at 2,075,391 to 2,075,807
_1955
HP15_1956: HP15_1956 - hypothetical protein, at 2,075,972 to 2,076,478
_1956
HP15_1957: HP15_1957 - hypothetical protein, at 2,076,475 to 2,077,446
_1957
Position (kb)
2075
2076 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 2074.426 kb on + strand, within HP15_1954 at 2074.452 kb on - strand, within HP15_1954 at 2074.557 kb on + strand, within HP15_1954 at 2074.562 kb on + strand, within HP15_1954 at 2074.577 kb on - strand, within HP15_1954 at 2074.588 kb on + strand, within HP15_1954 at 2074.691 kb on + strand, within HP15_1954 at 2074.708 kb on + strand, within HP15_1954 at 2074.729 kb on + strand, within HP15_1954 at 2074.806 kb on + strand, within HP15_1954 at 2074.861 kb on + strand, within HP15_1954 at 2075.003 kb on - strand, within HP15_1954 at 2075.190 kb on + strand at 2075.250 kb on - strand at 2075.304 kb on + strand at 2075.377 kb on + strand at 2075.538 kb on + strand, within HP15_1955 at 2075.587 kb on + strand, within HP15_1955 at 2075.617 kb on - strand, within HP15_1955 at 2075.656 kb on - strand, within HP15_1955 at 2075.696 kb on - strand, within HP15_1955 at 2075.905 kb on + strand at 2075.913 kb on - strand at 2075.970 kb on + strand at 2075.970 kb on + strand at 2075.977 kb on - strand at 2075.988 kb on + strand at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.067 kb on + strand, within HP15_1956 at 2076.075 kb on - strand, within HP15_1956 at 2076.108 kb on + strand, within HP15_1956 at 2076.116 kb on - strand, within HP15_1956 at 2076.318 kb on + strand, within HP15_1956 at 2076.380 kb on - strand, within HP15_1956 at 2076.570 kb on - strand at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.683 kb on - strand, within HP15_1957 at 2076.693 kb on - strand, within HP15_1957 at 2076.697 kb on + strand, within HP15_1957 at 2076.702 kb on + strand, within HP15_1957 at 2076.731 kb on + strand, within HP15_1957 at 2076.739 kb on - strand, within HP15_1957 at 2076.744 kb on - strand, within HP15_1957 at 2076.744 kb on - strand, within HP15_1957 at 2076.773 kb on - strand, within HP15_1957
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,074,426 + HP15_1954 0.67 +2.1 2,074,452 - HP15_1954 0.68 +2.5 2,074,557 + HP15_1954 0.71 +3.7 2,074,562 + HP15_1954 0.72 +2.9 2,074,577 - HP15_1954 0.72 +3.5 2,074,588 + HP15_1954 0.73 +1.3 2,074,691 + HP15_1954 0.76 +1.6 2,074,708 + HP15_1954 0.77 +1.8 2,074,729 + HP15_1954 0.78 +2.2 2,074,806 + HP15_1954 0.80 +3.1 2,074,861 + HP15_1954 0.82 +3.1 2,075,003 - HP15_1954 0.88 -0.5 2,075,190 + +3.1 2,075,250 - +4.8 2,075,304 + +0.5 2,075,377 + -1.5 2,075,538 + HP15_1955 0.35 -0.0 2,075,587 + HP15_1955 0.47 +1.2 2,075,617 - HP15_1955 0.54 +2.5 2,075,656 - HP15_1955 0.64 +1.7 2,075,696 - HP15_1955 0.73 +2.3 2,075,905 + +2.5 2,075,913 - +2.2 2,075,970 + +3.7 2,075,970 + +1.4 2,075,977 - +3.0 2,075,988 + +1.4 2,076,035 - HP15_1956 0.12 +5.9 2,076,035 - HP15_1956 0.12 +2.5 2,076,035 - HP15_1956 0.12 +2.9 2,076,035 - HP15_1956 0.12 +3.3 2,076,035 - HP15_1956 0.12 +1.7 2,076,067 + HP15_1956 0.19 +3.5 2,076,075 - HP15_1956 0.20 +2.0 2,076,108 + HP15_1956 0.27 +2.7 2,076,116 - HP15_1956 0.28 +3.7 2,076,318 + HP15_1956 0.68 +2.2 2,076,380 - HP15_1956 0.80 +2.8 2,076,570 - +1.7 2,076,576 + HP15_1957 0.10 +3.1 2,076,576 + HP15_1957 0.10 +2.4 2,076,576 + HP15_1957 0.10 +3.0 2,076,576 + HP15_1957 0.10 +2.1 2,076,683 - HP15_1957 0.21 +0.1 2,076,693 - HP15_1957 0.22 +2.8 2,076,697 + HP15_1957 0.23 +2.5 2,076,702 + HP15_1957 0.23 +1.9 2,076,731 + HP15_1957 0.26 +1.9 2,076,739 - HP15_1957 0.27 +3.0 2,076,744 - HP15_1957 0.28 +3.2 2,076,744 - HP15_1957 0.28 +2.2 2,076,773 - HP15_1957 0.31 +2.6
Or see this region's nucleotide sequence