Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1946 and HP15_tRNA35 are separated by 55 nucleotides HP15_tRNA35 and HP15_1947 are separated by 182 nucleotides HP15_1947 and HP15_1948 are separated by 222 nucleotides HP15_1948 and HP15_1949 are separated by 631 nucleotides
HP15_1946: HP15_1946 - membrane protein containing DUF6, transmembrane, at 2,065,503 to 2,066,453
_1946
HP15_tRNA35: HP15_tRNA35 - tRNA-Val, at 2,066,509 to 2,066,585
_tRNA35
HP15_1947: HP15_1947 - hypothetical protein, at 2,066,768 to 2,067,004
_1947
HP15_1948: HP15_1948 - hypothetical protein, at 2,067,227 to 2,067,409
_1948
HP15_1949: HP15_1949 - hypothetical protein, at 2,068,041 to 2,070,623
_1949
Position (kb)
2067
2068 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2066.248 kb on + strand, within HP15_1946 at 2066.250 kb on - strand, within HP15_1946 at 2066.269 kb on - strand, within HP15_1946 at 2066.302 kb on - strand, within HP15_1946 at 2066.304 kb on + strand, within HP15_1946 at 2066.307 kb on - strand, within HP15_1946 at 2066.309 kb on + strand, within HP15_1946 at 2066.317 kb on - strand, within HP15_1946 at 2066.359 kb on + strand at 2066.364 kb on + strand at 2066.393 kb on + strand at 2066.401 kb on - strand at 2066.505 kb on + strand at 2066.693 kb on + strand at 2066.725 kb on - strand at 2066.788 kb on + strand at 2066.945 kb on + strand, within HP15_1947 at 2066.949 kb on + strand, within HP15_1947 at 2067.110 kb on + strand at 2067.162 kb on - strand at 2067.162 kb on - strand at 2067.194 kb on + strand at 2067.222 kb on - strand at 2067.286 kb on - strand, within HP15_1948 at 2067.288 kb on + strand, within HP15_1948 at 2067.343 kb on + strand, within HP15_1948 at 2067.343 kb on + strand, within HP15_1948 at 2067.351 kb on - strand, within HP15_1948 at 2067.472 kb on - strand at 2067.762 kb on + strand at 2067.908 kb on + strand at 2068.011 kb on + strand at 2068.012 kb on + strand at 2068.018 kb on + strand at 2068.171 kb on - strand at 2068.171 kb on - strand at 2068.201 kb on - strand at 2068.248 kb on - strand at 2068.261 kb on + strand at 2068.300 kb on + strand, within HP15_1949 at 2068.350 kb on - strand, within HP15_1949
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,066,248 + HP15_1946 0.78 -0.2 2,066,250 - HP15_1946 0.79 -1.1 2,066,269 - HP15_1946 0.81 -1.1 2,066,302 - HP15_1946 0.84 +0.3 2,066,304 + HP15_1946 0.84 +1.5 2,066,307 - HP15_1946 0.85 +1.9 2,066,309 + HP15_1946 0.85 -1.9 2,066,317 - HP15_1946 0.86 +1.1 2,066,359 + -0.3 2,066,364 + +0.5 2,066,393 + -1.5 2,066,401 - +0.1 2,066,505 + +0.5 2,066,693 + +3.0 2,066,725 - +3.5 2,066,788 + +2.7 2,066,945 + HP15_1947 0.75 +2.6 2,066,949 + HP15_1947 0.76 +2.5 2,067,110 + +3.0 2,067,162 - +2.1 2,067,162 - +0.7 2,067,194 + +2.1 2,067,222 - +0.5 2,067,286 - HP15_1948 0.32 -1.1 2,067,288 + HP15_1948 0.33 -1.2 2,067,343 + HP15_1948 0.63 -1.1 2,067,343 + HP15_1948 0.63 +0.5 2,067,351 - HP15_1948 0.68 -0.8 2,067,472 - -1.3 2,067,762 + -1.4 2,067,908 + +2.5 2,068,011 + +3.5 2,068,012 + -0.5 2,068,018 + +0.2 2,068,171 - +1.4 2,068,171 - +2.4 2,068,201 - +1.0 2,068,248 - +2.3 2,068,261 + +3.2 2,068,300 + HP15_1949 0.10 +0.7 2,068,350 - HP15_1949 0.12 +2.2
Or see this region's nucleotide sequence