Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1923 and HP15_1924 are separated by 0 nucleotides HP15_1924 and HP15_1925 are separated by 126 nucleotides
HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518
_1923
HP15_1924: HP15_1924 - polysaccharide export protein, at 2,040,519 to 2,041,067
_1924
HP15_1925: HP15_1925 - undecaprenyl-phosphate galactosephosphotransferase, at 2,041,194 to 2,042,552
_1925
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2039.707 kb on + strand, within HP15_1923 at 2039.779 kb on + strand, within HP15_1923 at 2039.787 kb on + strand, within HP15_1923 at 2039.787 kb on - strand, within HP15_1923 at 2039.997 kb on - strand, within HP15_1923 at 2040.067 kb on - strand, within HP15_1923 at 2040.067 kb on - strand, within HP15_1923 at 2040.152 kb on + strand, within HP15_1923 at 2040.160 kb on - strand, within HP15_1923 at 2040.214 kb on + strand, within HP15_1923 at 2040.295 kb on + strand, within HP15_1923 at 2040.337 kb on - strand, within HP15_1923 at 2040.358 kb on + strand, within HP15_1923 at 2040.358 kb on + strand, within HP15_1923 at 2040.366 kb on - strand at 2040.366 kb on - strand at 2040.366 kb on - strand at 2040.671 kb on - strand, within HP15_1924 at 2040.695 kb on + strand, within HP15_1924 at 2040.723 kb on + strand, within HP15_1924 at 2040.731 kb on - strand, within HP15_1924 at 2040.731 kb on - strand, within HP15_1924 at 2040.879 kb on - strand, within HP15_1924 at 2040.980 kb on + strand, within HP15_1924 at 2040.993 kb on - strand, within HP15_1924 at 2041.024 kb on - strand at 2041.132 kb on + strand at 2041.140 kb on - strand at 2041.160 kb on + strand at 2041.335 kb on - strand, within HP15_1925 at 2041.439 kb on + strand, within HP15_1925 at 2041.450 kb on + strand, within HP15_1925 at 2041.467 kb on + strand, within HP15_1925 at 2041.540 kb on + strand, within HP15_1925 at 2041.560 kb on + strand, within HP15_1925 at 2041.798 kb on - strand, within HP15_1925 at 2041.798 kb on - strand, within HP15_1925 at 2041.886 kb on + strand, within HP15_1925 at 2041.938 kb on + strand, within HP15_1925 at 2041.946 kb on - strand, within HP15_1925 at 2042.062 kb on - strand, within HP15_1925
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,039,707 + HP15_1923 0.49 -0.8 2,039,779 + HP15_1923 0.53 +1.5 2,039,787 + HP15_1923 0.54 +0.3 2,039,787 - HP15_1923 0.54 -1.1 2,039,997 - HP15_1923 0.67 -2.1 2,040,067 - HP15_1923 0.71 +0.8 2,040,067 - HP15_1923 0.71 -0.5 2,040,152 + HP15_1923 0.77 -0.3 2,040,160 - HP15_1923 0.77 -2.3 2,040,214 + HP15_1923 0.81 -0.5 2,040,295 + HP15_1923 0.86 -0.3 2,040,337 - HP15_1923 0.88 +0.9 2,040,358 + HP15_1923 0.90 +0.3 2,040,358 + HP15_1923 0.90 -0.1 2,040,366 - -0.4 2,040,366 - +0.2 2,040,366 - -0.3 2,040,671 - HP15_1924 0.28 +2.4 2,040,695 + HP15_1924 0.32 -0.7 2,040,723 + HP15_1924 0.37 +1.3 2,040,731 - HP15_1924 0.39 +0.6 2,040,731 - HP15_1924 0.39 -1.1 2,040,879 - HP15_1924 0.66 +2.7 2,040,980 + HP15_1924 0.84 -0.1 2,040,993 - HP15_1924 0.86 -1.4 2,041,024 - -0.5 2,041,132 + -0.8 2,041,140 - -1.2 2,041,160 + +0.3 2,041,335 - HP15_1925 0.10 +0.9 2,041,439 + HP15_1925 0.18 -0.8 2,041,450 + HP15_1925 0.19 -0.5 2,041,467 + HP15_1925 0.20 -1.7 2,041,540 + HP15_1925 0.25 -2.3 2,041,560 + HP15_1925 0.27 -1.0 2,041,798 - HP15_1925 0.44 -0.6 2,041,798 - HP15_1925 0.44 -0.9 2,041,886 + HP15_1925 0.51 +0.6 2,041,938 + HP15_1925 0.55 -0.3 2,041,946 - HP15_1925 0.55 +0.7 2,042,062 - HP15_1925 0.64 -0.1
Or see this region's nucleotide sequence