Strain Fitness in Marinobacter adhaerens HP15 around HP15_1855

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1854 and HP15_1855 are separated by 174 nucleotidesHP15_1855 and HP15_1856 are separated by 264 nucleotides HP15_1854: HP15_1854 - transcriptional regulator, LysR family, at 1,953,004 to 1,953,981 _1854 HP15_1855: HP15_1855 - HTH-type transcriptional regulator MalT, at 1,954,156 to 1,956,948 _1855 HP15_1856: HP15_1856 - helicase c2, at 1,957,213 to 1,959,417 _1856 Position (kb) 1954 1955 1956 1957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1954.147 kb on + strandat 1954.198 kb on - strandat 1954.246 kb on - strandat 1954.262 kb on - strandat 1954.290 kb on + strandat 1954.393 kb on - strandat 1954.393 kb on - strandat 1954.480 kb on - strand, within HP15_1855at 1954.559 kb on - strand, within HP15_1855at 1954.643 kb on + strand, within HP15_1855at 1954.705 kb on - strand, within HP15_1855at 1954.764 kb on + strand, within HP15_1855at 1954.772 kb on - strand, within HP15_1855at 1954.777 kb on - strand, within HP15_1855at 1954.852 kb on - strand, within HP15_1855at 1954.973 kb on + strand, within HP15_1855at 1954.999 kb on - strand, within HP15_1855at 1955.052 kb on + strand, within HP15_1855at 1955.057 kb on + strand, within HP15_1855at 1955.057 kb on + strand, within HP15_1855at 1955.096 kb on + strand, within HP15_1855at 1955.184 kb on + strand, within HP15_1855at 1955.197 kb on + strand, within HP15_1855at 1955.207 kb on + strand, within HP15_1855at 1955.355 kb on + strand, within HP15_1855at 1955.402 kb on + strand, within HP15_1855at 1955.410 kb on - strand, within HP15_1855at 1955.455 kb on + strand, within HP15_1855at 1955.459 kb on + strand, within HP15_1855at 1955.495 kb on + strand, within HP15_1855at 1955.503 kb on - strand, within HP15_1855at 1955.550 kb on + strand, within HP15_1855at 1955.579 kb on - strand, within HP15_1855at 1955.653 kb on - strand, within HP15_1855at 1955.730 kb on + strand, within HP15_1855at 1955.744 kb on + strand, within HP15_1855at 1955.746 kb on + strand, within HP15_1855at 1955.806 kb on + strand, within HP15_1855at 1955.925 kb on - strand, within HP15_1855at 1955.925 kb on - strand, within HP15_1855at 1955.925 kb on - strand, within HP15_1855at 1955.950 kb on - strand, within HP15_1855at 1955.969 kb on + strand, within HP15_1855at 1956.236 kb on + strand, within HP15_1855at 1956.604 kb on + strand, within HP15_1855at 1956.719 kb on + strandat 1956.719 kb on + strandat 1956.778 kb on - strandat 1956.899 kb on + strandat 1957.121 kb on + strandat 1957.155 kb on - strandat 1957.164 kb on + strandat 1957.258 kb on + strandat 1957.315 kb on + strandat 1957.315 kb on + strandat 1957.320 kb on + strandat 1957.355 kb on + strandat 1957.550 kb on - strand, within HP15_1856at 1957.555 kb on + strand, within HP15_1856at 1957.568 kb on - strand, within HP15_1856at 1957.712 kb on + strand, within HP15_1856at 1957.712 kb on + strand, within HP15_1856at 1957.720 kb on - strand, within HP15_1856at 1957.796 kb on - strand, within HP15_1856at 1957.854 kb on - strand, within HP15_1856at 1957.906 kb on - strand, within HP15_1856at 1957.920 kb on - strand, within HP15_1856at 1957.920 kb on - strand, within HP15_1856at 1957.920 kb on - strand, within HP15_1856

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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1,954,147 + -0.6
1,954,198 - -1.2
1,954,246 - -1.3
1,954,262 - +1.3
1,954,290 + -1.1
1,954,393 - -1.2
1,954,393 - +0.8
1,954,480 - HP15_1855 0.12 -0.1
1,954,559 - HP15_1855 0.14 -0.3
1,954,643 + HP15_1855 0.17 -2.5
1,954,705 - HP15_1855 0.20 -1.9
1,954,764 + HP15_1855 0.22 -0.9
1,954,772 - HP15_1855 0.22 -0.3
1,954,777 - HP15_1855 0.22 -2.7
1,954,852 - HP15_1855 0.25 +0.3
1,954,973 + HP15_1855 0.29 -2.2
1,954,999 - HP15_1855 0.30 +0.4
1,955,052 + HP15_1855 0.32 -0.2
1,955,057 + HP15_1855 0.32 +1.2
1,955,057 + HP15_1855 0.32 -2.6
1,955,096 + HP15_1855 0.34 -3.2
1,955,184 + HP15_1855 0.37 -2.3
1,955,197 + HP15_1855 0.37 -2.3
1,955,207 + HP15_1855 0.38 -0.5
1,955,355 + HP15_1855 0.43 -1.6
1,955,402 + HP15_1855 0.45 -0.4
1,955,410 - HP15_1855 0.45 -0.8
1,955,455 + HP15_1855 0.47 +0.8
1,955,459 + HP15_1855 0.47 -2.4
1,955,495 + HP15_1855 0.48 -0.8
1,955,503 - HP15_1855 0.48 +2.6
1,955,550 + HP15_1855 0.50 -1.3
1,955,579 - HP15_1855 0.51 +0.4
1,955,653 - HP15_1855 0.54 -0.7
1,955,730 + HP15_1855 0.56 +0.2
1,955,744 + HP15_1855 0.57 -1.2
1,955,746 + HP15_1855 0.57 -0.6
1,955,806 + HP15_1855 0.59 +2.7
1,955,925 - HP15_1855 0.63 -1.7
1,955,925 - HP15_1855 0.63 -2.9
1,955,925 - HP15_1855 0.63 -3.4
1,955,950 - HP15_1855 0.64 +1.4
1,955,969 + HP15_1855 0.65 +1.7
1,956,236 + HP15_1855 0.74 +1.6
1,956,604 + HP15_1855 0.88 +0.4
1,956,719 + +0.4
1,956,719 + -1.2
1,956,778 - -0.9
1,956,899 + -1.1
1,957,121 + -1.5
1,957,155 - -0.5
1,957,164 + -0.8
1,957,258 + +2.3
1,957,315 + +3.5
1,957,315 + +4.9
1,957,320 + +2.4
1,957,355 + -0.2
1,957,550 - HP15_1856 0.15 +1.8
1,957,555 + HP15_1856 0.16 +3.8
1,957,568 - HP15_1856 0.16 +4.2
1,957,712 + HP15_1856 0.23 +1.7
1,957,712 + HP15_1856 0.23 +1.4
1,957,720 - HP15_1856 0.23 +2.2
1,957,796 - HP15_1856 0.26 +2.0
1,957,854 - HP15_1856 0.29 +1.3
1,957,906 - HP15_1856 0.31 +2.6
1,957,920 - HP15_1856 0.32 +2.3
1,957,920 - HP15_1856 0.32 +3.1
1,957,920 - HP15_1856 0.32 +2.0

Or see this region's nucleotide sequence