Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1839 and HP15_1840 are separated by 88 nucleotides HP15_1840 and HP15_1841 are separated by 5 nucleotides HP15_1841 and HP15_1842 overlap by 8 nucleotides
HP15_1839: HP15_1839 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 1,938,596 to 1,939,498
_1839
HP15_1840: HP15_1840 - patatin, at 1,939,587 to 1,940,801
_1840
HP15_1841: HP15_1841 - conserved hypothetical protein, secreted, at 1,940,807 to 1,941,721
_1841
HP15_1842: HP15_1842 - hydrolase, alpha/beta fold family, at 1,941,714 to 1,942,664
_1842
Position (kb)
1939
1940
1941 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1939.136 kb on - strand, within HP15_1839 at 1939.256 kb on - strand, within HP15_1839 at 1939.299 kb on - strand, within HP15_1839 at 1939.611 kb on + strand at 1939.619 kb on - strand at 1939.753 kb on + strand, within HP15_1840 at 1939.753 kb on + strand, within HP15_1840 at 1939.753 kb on + strand, within HP15_1840 at 1939.784 kb on - strand, within HP15_1840 at 1939.908 kb on + strand, within HP15_1840 at 1940.031 kb on - strand, within HP15_1840 at 1940.060 kb on + strand, within HP15_1840 at 1940.173 kb on + strand, within HP15_1840 at 1940.186 kb on - strand, within HP15_1840 at 1940.260 kb on + strand, within HP15_1840 at 1940.456 kb on + strand, within HP15_1840 at 1940.478 kb on - strand, within HP15_1840 at 1940.525 kb on - strand, within HP15_1840 at 1940.598 kb on + strand, within HP15_1840 at 1940.612 kb on - strand, within HP15_1840 at 1940.612 kb on - strand, within HP15_1840 at 1940.636 kb on - strand, within HP15_1840 at 1940.636 kb on - strand, within HP15_1840 at 1940.663 kb on - strand, within HP15_1840 at 1940.786 kb on + strand at 1940.916 kb on + strand, within HP15_1841 at 1941.041 kb on + strand, within HP15_1841 at 1941.099 kb on - strand, within HP15_1841 at 1941.265 kb on + strand, within HP15_1841 at 1941.273 kb on - strand, within HP15_1841 at 1941.500 kb on + strand, within HP15_1841 at 1941.551 kb on - strand, within HP15_1841 at 1941.551 kb on - strand, within HP15_1841 at 1941.572 kb on - strand, within HP15_1841 at 1941.618 kb on + strand, within HP15_1841 at 1941.618 kb on + strand, within HP15_1841 at 1941.643 kb on - strand at 1941.653 kb on - strand at 1941.671 kb on + strand at 1941.695 kb on - strand at 1941.799 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,939,136 - HP15_1839 0.60 -1.1 1,939,256 - HP15_1839 0.73 -0.2 1,939,299 - HP15_1839 0.78 +0.7 1,939,611 + +0.3 1,939,619 - +0.5 1,939,753 + HP15_1840 0.14 -1.4 1,939,753 + HP15_1840 0.14 +2.7 1,939,753 + HP15_1840 0.14 +1.0 1,939,784 - HP15_1840 0.16 +0.0 1,939,908 + HP15_1840 0.26 -0.5 1,940,031 - HP15_1840 0.37 -0.6 1,940,060 + HP15_1840 0.39 -2.1 1,940,173 + HP15_1840 0.48 +1.5 1,940,186 - HP15_1840 0.49 -0.1 1,940,260 + HP15_1840 0.55 +1.5 1,940,456 + HP15_1840 0.72 +0.6 1,940,478 - HP15_1840 0.73 +1.5 1,940,525 - HP15_1840 0.77 -1.2 1,940,598 + HP15_1840 0.83 +0.3 1,940,612 - HP15_1840 0.84 -0.2 1,940,612 - HP15_1840 0.84 -0.1 1,940,636 - HP15_1840 0.86 +0.6 1,940,636 - HP15_1840 0.86 -0.9 1,940,663 - HP15_1840 0.89 -0.1 1,940,786 + -2.1 1,940,916 + HP15_1841 0.12 -2.6 1,941,041 + HP15_1841 0.26 +0.8 1,941,099 - HP15_1841 0.32 -0.1 1,941,265 + HP15_1841 0.50 +0.9 1,941,273 - HP15_1841 0.51 -0.8 1,941,500 + HP15_1841 0.76 +0.5 1,941,551 - HP15_1841 0.81 +2.7 1,941,551 - HP15_1841 0.81 -2.3 1,941,572 - HP15_1841 0.84 -0.5 1,941,618 + HP15_1841 0.89 -0.9 1,941,618 + HP15_1841 0.89 -0.2 1,941,643 - -0.1 1,941,653 - +0.0 1,941,671 + -0.4 1,941,695 - -0.1 1,941,799 + +0.0
Or see this region's nucleotide sequence