Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_tRNA33 and HP15_1745 are separated by 75 nucleotides HP15_1745 and HP15_1746 are separated by 171 nucleotides HP15_1746 and HP15_1747 are separated by 2 nucleotides
HP15_tRNA33: HP15_tRNA33 - tRNA-Leu, at 1,843,336 to 1,843,422
_tRNA33
HP15_1745: HP15_1745 - methyltransferase type 11, at 1,843,498 to 1,844,151
_1745
HP15_1746: HP15_1746 - cytochrome d ubiquinol oxidase subunit I, at 1,844,323 to 1,845,765
_1746
HP15_1747: HP15_1747 - cytochrome d ubiquinol oxidase, subunit II, at 1,845,768 to 1,846,769
_1747
Position (kb)
1844
1845
1846 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1843.511 kb on - strand at 1843.513 kb on + strand at 1843.523 kb on + strand at 1843.576 kb on - strand, within HP15_1745 at 1843.576 kb on - strand, within HP15_1745 at 1843.634 kb on - strand, within HP15_1745 at 1843.634 kb on - strand, within HP15_1745 at 1843.787 kb on - strand, within HP15_1745 at 1843.813 kb on - strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.835 kb on - strand, within HP15_1745 at 1843.835 kb on - strand, within HP15_1745 at 1843.919 kb on + strand, within HP15_1745 at 1843.921 kb on - strand, within HP15_1745 at 1843.941 kb on + strand, within HP15_1745 at 1844.123 kb on - strand at 1844.162 kb on + strand at 1844.194 kb on - strand at 1844.317 kb on - strand at 1844.421 kb on - strand at 1844.483 kb on - strand, within HP15_1746 at 1844.588 kb on + strand, within HP15_1746 at 1844.611 kb on - strand, within HP15_1746 at 1844.696 kb on + strand, within HP15_1746 at 1844.748 kb on + strand, within HP15_1746 at 1844.748 kb on + strand, within HP15_1746 at 1844.825 kb on - strand, within HP15_1746 at 1844.930 kb on + strand, within HP15_1746 at 1844.987 kb on - strand, within HP15_1746 at 1845.025 kb on + strand, within HP15_1746 at 1845.287 kb on - strand, within HP15_1746 at 1845.504 kb on + strand, within HP15_1746 at 1845.540 kb on + strand, within HP15_1746 at 1845.548 kb on - strand, within HP15_1746 at 1845.579 kb on - strand, within HP15_1746 at 1845.635 kb on + strand at 1845.706 kb on + strand at 1845.834 kb on - strand at 1845.842 kb on - strand at 1845.892 kb on - strand, within HP15_1747 at 1846.212 kb on - strand, within HP15_1747 at 1846.239 kb on - strand, within HP15_1747 at 1846.441 kb on + strand, within HP15_1747 at 1846.481 kb on - strand, within HP15_1747 at 1846.557 kb on - strand, within HP15_1747 at 1846.581 kb on + strand, within HP15_1747 at 1846.617 kb on + strand, within HP15_1747 at 1846.703 kb on + strand at 1846.758 kb on + strand at 1846.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,843,511 - +0.1 1,843,513 + +0.5 1,843,523 + +0.5 1,843,576 - HP15_1745 0.12 +0.6 1,843,576 - HP15_1745 0.12 -0.5 1,843,634 - HP15_1745 0.21 +0.3 1,843,634 - HP15_1745 0.21 +0.0 1,843,787 - HP15_1745 0.44 -1.3 1,843,813 - HP15_1745 0.48 +0.3 1,843,815 + HP15_1745 0.48 +1.5 1,843,815 + HP15_1745 0.48 -0.5 1,843,815 + HP15_1745 0.48 +0.2 1,843,815 + HP15_1745 0.48 +0.7 1,843,815 + HP15_1745 0.48 +0.6 1,843,823 - HP15_1745 0.50 -1.7 1,843,823 - HP15_1745 0.50 +5.0 1,843,823 - HP15_1745 0.50 -0.1 1,843,823 - HP15_1745 0.50 -3.0 1,843,823 - HP15_1745 0.50 +1.5 1,843,835 - HP15_1745 0.52 +1.1 1,843,835 - HP15_1745 0.52 -2.1 1,843,919 + HP15_1745 0.64 +1.2 1,843,921 - HP15_1745 0.65 -1.8 1,843,941 + HP15_1745 0.68 -0.6 1,844,123 - +0.2 1,844,162 + -2.0 1,844,194 - +0.5 1,844,317 - -1.3 1,844,421 - -0.8 1,844,483 - HP15_1746 0.11 +0.3 1,844,588 + HP15_1746 0.18 +2.5 1,844,611 - HP15_1746 0.20 -0.1 1,844,696 + HP15_1746 0.26 -2.6 1,844,748 + HP15_1746 0.29 +0.5 1,844,748 + HP15_1746 0.29 -3.4 1,844,825 - HP15_1746 0.35 +0.2 1,844,930 + HP15_1746 0.42 -2.4 1,844,987 - HP15_1746 0.46 +0.1 1,845,025 + HP15_1746 0.49 -1.1 1,845,287 - HP15_1746 0.67 +1.1 1,845,504 + HP15_1746 0.82 +1.5 1,845,540 + HP15_1746 0.84 -0.5 1,845,548 - HP15_1746 0.85 -1.8 1,845,579 - HP15_1746 0.87 +0.2 1,845,635 + -0.5 1,845,706 + -1.3 1,845,834 - +0.8 1,845,842 - +0.5 1,845,892 - HP15_1747 0.12 -1.4 1,846,212 - HP15_1747 0.44 +0.3 1,846,239 - HP15_1747 0.47 +1.2 1,846,441 + HP15_1747 0.67 +0.1 1,846,481 - HP15_1747 0.71 +2.1 1,846,557 - HP15_1747 0.79 -0.8 1,846,581 + HP15_1747 0.81 -1.8 1,846,617 + HP15_1747 0.85 +1.2 1,846,703 + +0.5 1,846,758 + -1.4 1,846,758 + -0.8
Or see this region's nucleotide sequence