Strain Fitness in Marinobacter adhaerens HP15 around HP15_1712

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1711 and HP15_1712 are separated by 155 nucleotidesHP15_1712 and HP15_1713 overlap by 4 nucleotides HP15_1711: HP15_1711 - glucose-1-phosphate adenylyltransferase, at 1,806,916 to 1,808,181 _1711 HP15_1712: HP15_1712 - glycogen branching enzyme, at 1,808,337 to 1,810,271 _1712 HP15_1713: HP15_1713 - glycogen/starch synthase, ADP-glucose type, at 1,810,268 to 1,811,731 _1713 Position (kb) 1808 1809 1810 1811Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1807.339 kb on - strand, within HP15_1711at 1807.544 kb on - strand, within HP15_1711at 1807.598 kb on + strand, within HP15_1711at 1807.606 kb on - strand, within HP15_1711at 1807.606 kb on - strand, within HP15_1711at 1807.608 kb on + strand, within HP15_1711at 1807.656 kb on + strand, within HP15_1711at 1807.746 kb on - strand, within HP15_1711at 1807.800 kb on - strand, within HP15_1711at 1807.868 kb on + strand, within HP15_1711at 1807.897 kb on - strand, within HP15_1711at 1807.897 kb on - strand, within HP15_1711at 1807.897 kb on - strand, within HP15_1711at 1807.975 kb on - strand, within HP15_1711at 1808.094 kb on - strandat 1808.128 kb on - strandat 1808.261 kb on - strandat 1808.374 kb on + strandat 1808.392 kb on + strandat 1808.392 kb on + strandat 1808.392 kb on + strandat 1808.400 kb on - strandat 1808.400 kb on - strandat 1808.400 kb on - strandat 1808.433 kb on + strandat 1808.472 kb on - strandat 1808.520 kb on + strandat 1808.520 kb on + strandat 1808.641 kb on - strand, within HP15_1712at 1808.709 kb on - strand, within HP15_1712at 1808.802 kb on + strand, within HP15_1712at 1808.860 kb on - strand, within HP15_1712at 1808.890 kb on + strand, within HP15_1712at 1808.914 kb on + strand, within HP15_1712at 1808.984 kb on + strand, within HP15_1712at 1809.011 kb on - strand, within HP15_1712at 1809.200 kb on + strand, within HP15_1712at 1809.264 kb on + strand, within HP15_1712at 1809.272 kb on - strand, within HP15_1712at 1809.277 kb on - strand, within HP15_1712at 1809.298 kb on + strand, within HP15_1712at 1809.327 kb on - strand, within HP15_1712at 1809.400 kb on - strand, within HP15_1712at 1809.453 kb on + strand, within HP15_1712at 1809.560 kb on - strand, within HP15_1712at 1809.566 kb on + strand, within HP15_1712at 1809.619 kb on + strand, within HP15_1712at 1809.619 kb on + strand, within HP15_1712at 1809.627 kb on - strand, within HP15_1712at 1809.627 kb on - strand, within HP15_1712at 1809.629 kb on + strand, within HP15_1712at 1809.637 kb on - strand, within HP15_1712at 1809.843 kb on + strand, within HP15_1712at 1809.866 kb on - strand, within HP15_1712at 1809.871 kb on - strand, within HP15_1712at 1809.871 kb on - strand, within HP15_1712at 1809.883 kb on - strand, within HP15_1712at 1810.037 kb on - strand, within HP15_1712at 1810.102 kb on - strandat 1810.109 kb on - strandat 1810.305 kb on - strandat 1810.378 kb on - strandat 1810.463 kb on + strand, within HP15_1713at 1810.471 kb on - strand, within HP15_1713at 1810.471 kb on - strand, within HP15_1713at 1810.523 kb on + strand, within HP15_1713at 1810.661 kb on - strand, within HP15_1713at 1810.787 kb on + strand, within HP15_1713at 1810.811 kb on + strand, within HP15_1713at 1810.812 kb on + strand, within HP15_1713at 1810.820 kb on - strand, within HP15_1713at 1810.820 kb on - strand, within HP15_1713at 1810.884 kb on - strand, within HP15_1713at 1811.052 kb on + strand, within HP15_1713at 1811.052 kb on + strand, within HP15_1713at 1811.060 kb on - strand, within HP15_1713at 1811.104 kb on + strand, within HP15_1713at 1811.104 kb on + strand, within HP15_1713at 1811.200 kb on - strand, within HP15_1713at 1811.202 kb on + strand, within HP15_1713at 1811.236 kb on + strand, within HP15_1713

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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1,807,339 - HP15_1711 0.33 +0.1
1,807,544 - HP15_1711 0.50 +0.4
1,807,598 + HP15_1711 0.54 -1.8
1,807,606 - HP15_1711 0.55 +0.5
1,807,606 - HP15_1711 0.55 -1.1
1,807,608 + HP15_1711 0.55 +0.0
1,807,656 + HP15_1711 0.58 -2.0
1,807,746 - HP15_1711 0.66 -0.1
1,807,800 - HP15_1711 0.70 -1.0
1,807,868 + HP15_1711 0.75 -3.5
1,807,897 - HP15_1711 0.77 -0.1
1,807,897 - HP15_1711 0.77 +1.5
1,807,897 - HP15_1711 0.77 +1.0
1,807,975 - HP15_1711 0.84 +0.5
1,808,094 - -1.5
1,808,128 - -0.8
1,808,261 - +0.1
1,808,374 + +0.7
1,808,392 + -1.6
1,808,392 + -1.7
1,808,392 + -0.1
1,808,400 - +1.2
1,808,400 - -0.8
1,808,400 - -1.0
1,808,433 + -1.4
1,808,472 - -1.3
1,808,520 + -1.8
1,808,520 + +0.8
1,808,641 - HP15_1712 0.16 +0.7
1,808,709 - HP15_1712 0.19 -1.5
1,808,802 + HP15_1712 0.24 +0.7
1,808,860 - HP15_1712 0.27 +0.5
1,808,890 + HP15_1712 0.29 +0.4
1,808,914 + HP15_1712 0.30 -1.5
1,808,984 + HP15_1712 0.33 -2.4
1,809,011 - HP15_1712 0.35 +1.0
1,809,200 + HP15_1712 0.45 +0.2
1,809,264 + HP15_1712 0.48 -0.4
1,809,272 - HP15_1712 0.48 -1.1
1,809,277 - HP15_1712 0.49 +0.4
1,809,298 + HP15_1712 0.50 +2.5
1,809,327 - HP15_1712 0.51 +0.5
1,809,400 - HP15_1712 0.55 +0.4
1,809,453 + HP15_1712 0.58 +0.8
1,809,560 - HP15_1712 0.63 -0.4
1,809,566 + HP15_1712 0.64 +0.7
1,809,619 + HP15_1712 0.66 -1.7
1,809,619 + HP15_1712 0.66 +0.8
1,809,627 - HP15_1712 0.67 +1.4
1,809,627 - HP15_1712 0.67 -2.3
1,809,629 + HP15_1712 0.67 +2.5
1,809,637 - HP15_1712 0.67 +0.5
1,809,843 + HP15_1712 0.78 -2.3
1,809,866 - HP15_1712 0.79 +0.2
1,809,871 - HP15_1712 0.79 -0.5
1,809,871 - HP15_1712 0.79 -0.8
1,809,883 - HP15_1712 0.80 -0.1
1,810,037 - HP15_1712 0.88 -0.4
1,810,102 - -1.8
1,810,109 - -0.2
1,810,305 - +1.7
1,810,378 - +0.2
1,810,463 + HP15_1713 0.13 -1.5
1,810,471 - HP15_1713 0.14 -1.7
1,810,471 - HP15_1713 0.14 +0.3
1,810,523 + HP15_1713 0.17 -1.2
1,810,661 - HP15_1713 0.27 -1.3
1,810,787 + HP15_1713 0.35 -1.3
1,810,811 + HP15_1713 0.37 +0.6
1,810,812 + HP15_1713 0.37 -1.3
1,810,820 - HP15_1713 0.38 -0.5
1,810,820 - HP15_1713 0.38 -2.2
1,810,884 - HP15_1713 0.42 -0.7
1,811,052 + HP15_1713 0.54 -0.3
1,811,052 + HP15_1713 0.54 -1.0
1,811,060 - HP15_1713 0.54 +0.7
1,811,104 + HP15_1713 0.57 +0.5
1,811,104 + HP15_1713 0.57 +0.5
1,811,200 - HP15_1713 0.64 -0.5
1,811,202 + HP15_1713 0.64 -0.4
1,811,236 + HP15_1713 0.66 -0.2

Or see this region's nucleotide sequence