Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1711 and HP15_1712 are separated by 155 nucleotides HP15_1712 and HP15_1713 overlap by 4 nucleotides
HP15_1711: HP15_1711 - glucose-1-phosphate adenylyltransferase, at 1,806,916 to 1,808,181
_1711
HP15_1712: HP15_1712 - glycogen branching enzyme, at 1,808,337 to 1,810,271
_1712
HP15_1713: HP15_1713 - glycogen/starch synthase, ADP-glucose type, at 1,810,268 to 1,811,731
_1713
Position (kb)
1808
1809
1810
1811 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1807.339 kb on - strand, within HP15_1711 at 1807.544 kb on - strand, within HP15_1711 at 1807.598 kb on + strand, within HP15_1711 at 1807.606 kb on - strand, within HP15_1711 at 1807.606 kb on - strand, within HP15_1711 at 1807.608 kb on + strand, within HP15_1711 at 1807.656 kb on + strand, within HP15_1711 at 1807.746 kb on - strand, within HP15_1711 at 1807.800 kb on - strand, within HP15_1711 at 1807.868 kb on + strand, within HP15_1711 at 1807.897 kb on - strand, within HP15_1711 at 1807.897 kb on - strand, within HP15_1711 at 1807.897 kb on - strand, within HP15_1711 at 1807.975 kb on - strand, within HP15_1711 at 1808.094 kb on - strand at 1808.128 kb on - strand at 1808.261 kb on - strand at 1808.374 kb on + strand at 1808.392 kb on + strand at 1808.392 kb on + strand at 1808.392 kb on + strand at 1808.400 kb on - strand at 1808.400 kb on - strand at 1808.400 kb on - strand at 1808.433 kb on + strand at 1808.472 kb on - strand at 1808.520 kb on + strand at 1808.520 kb on + strand at 1808.641 kb on - strand, within HP15_1712 at 1808.709 kb on - strand, within HP15_1712 at 1808.802 kb on + strand, within HP15_1712 at 1808.860 kb on - strand, within HP15_1712 at 1808.890 kb on + strand, within HP15_1712 at 1808.914 kb on + strand, within HP15_1712 at 1808.984 kb on + strand, within HP15_1712 at 1809.011 kb on - strand, within HP15_1712 at 1809.200 kb on + strand, within HP15_1712 at 1809.264 kb on + strand, within HP15_1712 at 1809.272 kb on - strand, within HP15_1712 at 1809.277 kb on - strand, within HP15_1712 at 1809.298 kb on + strand, within HP15_1712 at 1809.327 kb on - strand, within HP15_1712 at 1809.400 kb on - strand, within HP15_1712 at 1809.453 kb on + strand, within HP15_1712 at 1809.560 kb on - strand, within HP15_1712 at 1809.566 kb on + strand, within HP15_1712 at 1809.619 kb on + strand, within HP15_1712 at 1809.619 kb on + strand, within HP15_1712 at 1809.627 kb on - strand, within HP15_1712 at 1809.627 kb on - strand, within HP15_1712 at 1809.629 kb on + strand, within HP15_1712 at 1809.637 kb on - strand, within HP15_1712 at 1809.843 kb on + strand, within HP15_1712 at 1809.866 kb on - strand, within HP15_1712 at 1809.871 kb on - strand, within HP15_1712 at 1809.871 kb on - strand, within HP15_1712 at 1809.883 kb on - strand, within HP15_1712 at 1810.037 kb on - strand, within HP15_1712 at 1810.102 kb on - strand at 1810.109 kb on - strand at 1810.305 kb on - strand at 1810.378 kb on - strand at 1810.463 kb on + strand, within HP15_1713 at 1810.471 kb on - strand, within HP15_1713 at 1810.471 kb on - strand, within HP15_1713 at 1810.523 kb on + strand, within HP15_1713 at 1810.661 kb on - strand, within HP15_1713 at 1810.787 kb on + strand, within HP15_1713 at 1810.811 kb on + strand, within HP15_1713 at 1810.812 kb on + strand, within HP15_1713 at 1810.820 kb on - strand, within HP15_1713 at 1810.820 kb on - strand, within HP15_1713 at 1810.884 kb on - strand, within HP15_1713 at 1811.052 kb on + strand, within HP15_1713 at 1811.052 kb on + strand, within HP15_1713 at 1811.060 kb on - strand, within HP15_1713 at 1811.104 kb on + strand, within HP15_1713 at 1811.104 kb on + strand, within HP15_1713 at 1811.200 kb on - strand, within HP15_1713 at 1811.202 kb on + strand, within HP15_1713 at 1811.236 kb on + strand, within HP15_1713
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,807,339 - HP15_1711 0.33 +0.1 1,807,544 - HP15_1711 0.50 +0.4 1,807,598 + HP15_1711 0.54 -1.8 1,807,606 - HP15_1711 0.55 +0.5 1,807,606 - HP15_1711 0.55 -1.1 1,807,608 + HP15_1711 0.55 +0.0 1,807,656 + HP15_1711 0.58 -2.0 1,807,746 - HP15_1711 0.66 -0.1 1,807,800 - HP15_1711 0.70 -1.0 1,807,868 + HP15_1711 0.75 -3.5 1,807,897 - HP15_1711 0.77 -0.1 1,807,897 - HP15_1711 0.77 +1.5 1,807,897 - HP15_1711 0.77 +1.0 1,807,975 - HP15_1711 0.84 +0.5 1,808,094 - -1.5 1,808,128 - -0.8 1,808,261 - +0.1 1,808,374 + +0.7 1,808,392 + -1.6 1,808,392 + -1.7 1,808,392 + -0.1 1,808,400 - +1.2 1,808,400 - -0.8 1,808,400 - -1.0 1,808,433 + -1.4 1,808,472 - -1.3 1,808,520 + -1.8 1,808,520 + +0.8 1,808,641 - HP15_1712 0.16 +0.7 1,808,709 - HP15_1712 0.19 -1.5 1,808,802 + HP15_1712 0.24 +0.7 1,808,860 - HP15_1712 0.27 +0.5 1,808,890 + HP15_1712 0.29 +0.4 1,808,914 + HP15_1712 0.30 -1.5 1,808,984 + HP15_1712 0.33 -2.4 1,809,011 - HP15_1712 0.35 +1.0 1,809,200 + HP15_1712 0.45 +0.2 1,809,264 + HP15_1712 0.48 -0.4 1,809,272 - HP15_1712 0.48 -1.1 1,809,277 - HP15_1712 0.49 +0.4 1,809,298 + HP15_1712 0.50 +2.5 1,809,327 - HP15_1712 0.51 +0.5 1,809,400 - HP15_1712 0.55 +0.4 1,809,453 + HP15_1712 0.58 +0.8 1,809,560 - HP15_1712 0.63 -0.4 1,809,566 + HP15_1712 0.64 +0.7 1,809,619 + HP15_1712 0.66 -1.7 1,809,619 + HP15_1712 0.66 +0.8 1,809,627 - HP15_1712 0.67 +1.4 1,809,627 - HP15_1712 0.67 -2.3 1,809,629 + HP15_1712 0.67 +2.5 1,809,637 - HP15_1712 0.67 +0.5 1,809,843 + HP15_1712 0.78 -2.3 1,809,866 - HP15_1712 0.79 +0.2 1,809,871 - HP15_1712 0.79 -0.5 1,809,871 - HP15_1712 0.79 -0.8 1,809,883 - HP15_1712 0.80 -0.1 1,810,037 - HP15_1712 0.88 -0.4 1,810,102 - -1.8 1,810,109 - -0.2 1,810,305 - +1.7 1,810,378 - +0.2 1,810,463 + HP15_1713 0.13 -1.5 1,810,471 - HP15_1713 0.14 -1.7 1,810,471 - HP15_1713 0.14 +0.3 1,810,523 + HP15_1713 0.17 -1.2 1,810,661 - HP15_1713 0.27 -1.3 1,810,787 + HP15_1713 0.35 -1.3 1,810,811 + HP15_1713 0.37 +0.6 1,810,812 + HP15_1713 0.37 -1.3 1,810,820 - HP15_1713 0.38 -0.5 1,810,820 - HP15_1713 0.38 -2.2 1,810,884 - HP15_1713 0.42 -0.7 1,811,052 + HP15_1713 0.54 -0.3 1,811,052 + HP15_1713 0.54 -1.0 1,811,060 - HP15_1713 0.54 +0.7 1,811,104 + HP15_1713 0.57 +0.5 1,811,104 + HP15_1713 0.57 +0.5 1,811,200 - HP15_1713 0.64 -0.5 1,811,202 + HP15_1713 0.64 -0.4 1,811,236 + HP15_1713 0.66 -0.2
Or see this region's nucleotide sequence