Strain Fitness in Marinobacter adhaerens HP15 around HP15_1613

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1612 and HP15_1613 are separated by 38 nucleotidesHP15_1613 and HP15_1614 overlap by 8 nucleotides HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771 _1612 HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753 _1613 HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618 _1614 Position (kb) 1708 1709 1710 1711Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1707.944 kb on + strand, within HP15_1612at 1707.952 kb on - strand, within HP15_1612at 1707.981 kb on + strand, within HP15_1612at 1708.148 kb on + strand, within HP15_1612at 1708.173 kb on + strand, within HP15_1612at 1708.229 kb on - strand, within HP15_1612at 1708.229 kb on - strand, within HP15_1612at 1708.285 kb on + strand, within HP15_1612at 1708.321 kb on - strand, within HP15_1612at 1708.356 kb on + strand, within HP15_1612at 1708.366 kb on + strand, within HP15_1612at 1708.381 kb on - strand, within HP15_1612at 1708.521 kb on - strand, within HP15_1612at 1708.707 kb on - strandat 1708.815 kb on + strandat 1708.862 kb on + strandat 1708.870 kb on - strandat 1709.006 kb on - strand, within HP15_1613at 1709.051 kb on - strand, within HP15_1613at 1709.069 kb on + strand, within HP15_1613at 1709.074 kb on + strand, within HP15_1613at 1709.293 kb on - strand, within HP15_1613at 1709.293 kb on - strand, within HP15_1613at 1709.293 kb on - strand, within HP15_1613at 1709.303 kb on - strand, within HP15_1613at 1709.327 kb on + strand, within HP15_1613at 1709.355 kb on + strand, within HP15_1613at 1709.411 kb on - strand, within HP15_1613at 1709.615 kb on - strand, within HP15_1613at 1709.664 kb on - strand, within HP15_1613at 1709.716 kb on + strand, within HP15_1613at 1709.760 kb on - strand, within HP15_1613at 1709.819 kb on + strand, within HP15_1613at 1709.819 kb on - strand, within HP15_1613at 1709.827 kb on - strand, within HP15_1613at 1709.829 kb on - strand, within HP15_1613at 1709.888 kb on + strand, within HP15_1613at 1709.888 kb on - strand, within HP15_1613at 1709.890 kb on + strand, within HP15_1613at 1709.890 kb on + strand, within HP15_1613at 1709.898 kb on - strand, within HP15_1613at 1709.915 kb on - strand, within HP15_1613at 1710.001 kb on - strand, within HP15_1613at 1710.008 kb on + strand, within HP15_1613at 1710.016 kb on - strand, within HP15_1613at 1710.216 kb on + strand, within HP15_1613at 1710.291 kb on - strand, within HP15_1613at 1710.291 kb on - strand, within HP15_1613at 1710.291 kb on - strand, within HP15_1613at 1710.301 kb on - strand, within HP15_1613at 1710.418 kb on + strand, within HP15_1613at 1710.423 kb on + strand, within HP15_1613at 1710.648 kb on - strandat 1710.655 kb on - strandat 1710.751 kb on + strandat 1710.869 kb on + strand, within HP15_1614at 1710.990 kb on + strand, within HP15_1614at 1711.097 kb on + strand, within HP15_1614at 1711.219 kb on + strand, within HP15_1614at 1711.291 kb on - strand, within HP15_1614at 1711.313 kb on + strand, within HP15_1614at 1711.319 kb on - strand, within HP15_1614at 1711.626 kb on - strandat 1711.717 kb on + strandat 1711.718 kb on - strandat 1711.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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1,707,944 + HP15_1612 0.39 -0.9
1,707,952 - HP15_1612 0.40 -0.2
1,707,981 + HP15_1612 0.42 -0.9
1,708,148 + HP15_1612 0.54 +0.8
1,708,173 + HP15_1612 0.56 -0.2
1,708,229 - HP15_1612 0.60 +0.7
1,708,229 - HP15_1612 0.60 -0.2
1,708,285 + HP15_1612 0.64 -1.5
1,708,321 - HP15_1612 0.67 -1.2
1,708,356 + HP15_1612 0.69 -1.2
1,708,366 + HP15_1612 0.70 -0.9
1,708,381 - HP15_1612 0.71 -3.5
1,708,521 - HP15_1612 0.82 +0.4
1,708,707 - -1.7
1,708,815 + -0.9
1,708,862 + -2.0
1,708,870 - -0.8
1,709,006 - HP15_1613 0.10 -0.2
1,709,051 - HP15_1613 0.12 -1.7
1,709,069 + HP15_1613 0.13 -2.6
1,709,074 + HP15_1613 0.14 +0.1
1,709,293 - HP15_1613 0.25 +0.0
1,709,293 - HP15_1613 0.25 +0.1
1,709,293 - HP15_1613 0.25 -0.4
1,709,303 - HP15_1613 0.25 +0.4
1,709,327 + HP15_1613 0.27 -0.2
1,709,355 + HP15_1613 0.28 -1.9
1,709,411 - HP15_1613 0.31 -3.2
1,709,615 - HP15_1613 0.41 -2.0
1,709,664 - HP15_1613 0.44 -0.3
1,709,716 + HP15_1613 0.47 -1.3
1,709,760 - HP15_1613 0.49 -0.3
1,709,819 + HP15_1613 0.52 -1.9
1,709,819 - HP15_1613 0.52 +1.0
1,709,827 - HP15_1613 0.52 -1.3
1,709,829 - HP15_1613 0.52 -0.7
1,709,888 + HP15_1613 0.55 -1.3
1,709,888 - HP15_1613 0.55 +0.1
1,709,890 + HP15_1613 0.56 -1.2
1,709,890 + HP15_1613 0.56 -0.7
1,709,898 - HP15_1613 0.56 -0.5
1,709,915 - HP15_1613 0.57 -0.4
1,710,001 - HP15_1613 0.61 -0.8
1,710,008 + HP15_1613 0.62 +0.4
1,710,016 - HP15_1613 0.62 -0.5
1,710,216 + HP15_1613 0.72 +1.4
1,710,291 - HP15_1613 0.76 -0.7
1,710,291 - HP15_1613 0.76 -0.2
1,710,291 - HP15_1613 0.76 -0.3
1,710,301 - HP15_1613 0.77 +0.1
1,710,418 + HP15_1613 0.83 +0.4
1,710,423 + HP15_1613 0.83 +1.0
1,710,648 - +1.4
1,710,655 - -2.9
1,710,751 + +0.5
1,710,869 + HP15_1614 0.14 +2.9
1,710,990 + HP15_1614 0.28 +0.3
1,711,097 + HP15_1614 0.40 +0.9
1,711,219 + HP15_1614 0.54 +1.5
1,711,291 - HP15_1614 0.62 -2.5
1,711,313 + HP15_1614 0.65 +0.4
1,711,319 - HP15_1614 0.66 +3.0
1,711,626 - +0.1
1,711,717 + -0.7
1,711,718 - -0.4
1,711,735 - -0.2

Or see this region's nucleotide sequence