Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1582 and HP15_1583 are separated by 186 nucleotides HP15_1583 and HP15_1584 are separated by 295 nucleotides
HP15_1582: HP15_1582 - type III restriction enzyme, res subunit, at 1,670,424 to 1,673,453
_1582
HP15_1583: HP15_1583 - conserved hypothetical protein, at 1,673,640 to 1,674,194
_1583
HP15_1584: HP15_1584 - conserved hypothetical protein, at 1,674,490 to 1,675,980
_1584
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1672.682 kb on + strand, within HP15_1582 at 1672.705 kb on - strand, within HP15_1582 at 1672.909 kb on - strand, within HP15_1582 at 1672.945 kb on - strand, within HP15_1582 at 1672.982 kb on + strand, within HP15_1582 at 1673.015 kb on - strand, within HP15_1582 at 1673.083 kb on - strand, within HP15_1582 at 1673.164 kb on - strand at 1673.181 kb on - strand at 1673.181 kb on - strand at 1673.181 kb on - strand at 1673.203 kb on - strand at 1673.308 kb on + strand at 1673.359 kb on + strand at 1673.405 kb on + strand at 1673.405 kb on + strand at 1673.405 kb on + strand at 1673.508 kb on + strand at 1673.513 kb on + strand at 1673.542 kb on + strand at 1673.557 kb on - strand at 1673.605 kb on - strand at 1673.621 kb on - strand at 1673.819 kb on + strand, within HP15_1583 at 1673.829 kb on + strand, within HP15_1583 at 1673.837 kb on - strand, within HP15_1583 at 1673.839 kb on - strand, within HP15_1583 at 1673.928 kb on + strand, within HP15_1583 at 1674.021 kb on - strand, within HP15_1583 at 1674.023 kb on + strand, within HP15_1583 at 1674.090 kb on - strand, within HP15_1583 at 1674.153 kb on + strand at 1674.241 kb on - strand at 1674.252 kb on + strand at 1674.289 kb on + strand at 1674.297 kb on - strand at 1674.328 kb on + strand at 1674.361 kb on - strand at 1674.371 kb on - strand at 1674.725 kb on - strand, within HP15_1584 at 1674.885 kb on - strand, within HP15_1584 at 1674.952 kb on - strand, within HP15_1584 at 1675.077 kb on + strand, within HP15_1584 at 1675.085 kb on - strand, within HP15_1584 at 1675.095 kb on + strand, within HP15_1584 at 1675.136 kb on - strand, within HP15_1584
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,672,682 + HP15_1582 0.75 -1.9 1,672,705 - HP15_1582 0.75 +0.2 1,672,909 - HP15_1582 0.82 -3.4 1,672,945 - HP15_1582 0.83 +1.6 1,672,982 + HP15_1582 0.84 +4.1 1,673,015 - HP15_1582 0.86 -0.9 1,673,083 - HP15_1582 0.88 -1.1 1,673,164 - +0.3 1,673,181 - +0.5 1,673,181 - +2.5 1,673,181 - +0.9 1,673,203 - -0.2 1,673,308 + -1.9 1,673,359 + -1.4 1,673,405 + -1.4 1,673,405 + +2.0 1,673,405 + +0.4 1,673,508 + +1.0 1,673,513 + -1.9 1,673,542 + -0.9 1,673,557 - +0.1 1,673,605 - +0.9 1,673,621 - +1.5 1,673,819 + HP15_1583 0.32 +0.1 1,673,829 + HP15_1583 0.34 -1.2 1,673,837 - HP15_1583 0.35 +0.8 1,673,839 - HP15_1583 0.36 +1.1 1,673,928 + HP15_1583 0.52 +0.8 1,674,021 - HP15_1583 0.69 +0.9 1,674,023 + HP15_1583 0.69 -0.1 1,674,090 - HP15_1583 0.81 -3.2 1,674,153 + +1.1 1,674,241 - -2.2 1,674,252 + -0.2 1,674,289 + +1.2 1,674,297 - -3.1 1,674,328 + -0.0 1,674,361 - -0.1 1,674,371 - -0.7 1,674,725 - HP15_1584 0.16 +0.1 1,674,885 - HP15_1584 0.26 +0.3 1,674,952 - HP15_1584 0.31 -1.1 1,675,077 + HP15_1584 0.39 -2.8 1,675,085 - HP15_1584 0.40 -1.5 1,675,095 + HP15_1584 0.41 -0.7 1,675,136 - HP15_1584 0.43 +2.1
Or see this region's nucleotide sequence