Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15730 and PGA1_c15740 are separated by 2 nucleotides PGA1_c15740 and PGA1_c15750 are separated by 14 nucleotides PGA1_c15750 and PGA1_c15760 are separated by 12 nucleotides
PGA1_c15730: PGA1_c15730 - phosphate regulon transcriptional regulatory protein PhoB, at 1,633,104 to 1,633,793
_c15730
PGA1_c15740: PGA1_c15740 - phosphate transport system protein PhoU, at 1,633,796 to 1,634,506
_c15740
PGA1_c15750: PGA1_c15750 - phosphate import ATP-binding protein PstB, at 1,634,521 to 1,635,318
_c15750
PGA1_c15760: PGA1_c15760 - putative phosphate transport system permease protein PstA, at 1,635,331 to 1,636,701
_c15760
Position (kb) 1634
1635
1636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1633.523 kb on + strand, within PGA1_c15730 at 1633.595 kb on + strand, within PGA1_c15730 at 1633.595 kb on + strand, within PGA1_c15730 at 1633.603 kb on - strand, within PGA1_c15730 at 1633.603 kb on - strand, within PGA1_c15730 at 1633.673 kb on - strand, within PGA1_c15730 at 1633.794 kb on + strand at 1633.802 kb on - strand at 1633.954 kb on + strand, within PGA1_c15740 at 1634.059 kb on + strand, within PGA1_c15740 at 1634.155 kb on + strand, within PGA1_c15740 at 1634.155 kb on + strand, within PGA1_c15740 at 1634.168 kb on + strand, within PGA1_c15740 at 1634.436 kb on - strand at 1634.653 kb on + strand, within PGA1_c15750 at 1634.687 kb on - strand, within PGA1_c15750 at 1634.745 kb on + strand, within PGA1_c15750 at 1634.750 kb on + strand, within PGA1_c15750 at 1634.755 kb on + strand, within PGA1_c15750 at 1634.758 kb on - strand, within PGA1_c15750 at 1634.758 kb on - strand, within PGA1_c15750 at 1634.758 kb on - strand, within PGA1_c15750 at 1635.014 kb on + strand, within PGA1_c15750 at 1635.018 kb on - strand, within PGA1_c15750 at 1635.126 kb on + strand, within PGA1_c15750 at 1635.126 kb on + strand, within PGA1_c15750 at 1635.134 kb on - strand, within PGA1_c15750 at 1635.134 kb on - strand, within PGA1_c15750 at 1635.290 kb on + strand at 1635.298 kb on - strand at 1635.298 kb on - strand at 1635.327 kb on + strand at 1635.345 kb on - strand at 1635.368 kb on + strand at 1635.368 kb on - strand at 1635.368 kb on - strand at 1635.424 kb on - strand at 1635.584 kb on + strand, within PGA1_c15760 at 1635.654 kb on - strand, within PGA1_c15760 at 1635.771 kb on - strand, within PGA1_c15760 at 1635.772 kb on - strand, within PGA1_c15760 at 1635.932 kb on - strand, within PGA1_c15760 at 1635.932 kb on - strand, within PGA1_c15760 at 1636.071 kb on + strand, within PGA1_c15760 at 1636.126 kb on - strand, within PGA1_c15760 at 1636.162 kb on + strand, within PGA1_c15760 at 1636.171 kb on + strand, within PGA1_c15760
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,633,523 + PGA1_c15730 0.61 -1.0 1,633,595 + PGA1_c15730 0.71 +1.1 1,633,595 + PGA1_c15730 0.71 +0.6 1,633,603 - PGA1_c15730 0.72 -1.3 1,633,603 - PGA1_c15730 0.72 +1.7 1,633,673 - PGA1_c15730 0.82 +1.6 1,633,794 + +0.3 1,633,802 - -3.0 1,633,954 + PGA1_c15740 0.22 -2.6 1,634,059 + PGA1_c15740 0.37 -1.5 1,634,155 + PGA1_c15740 0.50 -1.7 1,634,155 + PGA1_c15740 0.50 -3.1 1,634,168 + PGA1_c15740 0.52 -0.0 1,634,436 - +0.5 1,634,653 + PGA1_c15750 0.17 -3.7 1,634,687 - PGA1_c15750 0.21 -2.1 1,634,745 + PGA1_c15750 0.28 -0.2 1,634,750 + PGA1_c15750 0.29 +1.5 1,634,755 + PGA1_c15750 0.29 -1.5 1,634,758 - PGA1_c15750 0.30 +1.3 1,634,758 - PGA1_c15750 0.30 +0.2 1,634,758 - PGA1_c15750 0.30 +2.3 1,635,014 + PGA1_c15750 0.62 +0.8 1,635,018 - PGA1_c15750 0.62 +2.3 1,635,126 + PGA1_c15750 0.76 -0.4 1,635,126 + PGA1_c15750 0.76 +1.9 1,635,134 - PGA1_c15750 0.77 +2.6 1,635,134 - PGA1_c15750 0.77 -0.5 1,635,290 + -0.5 1,635,298 - -0.4 1,635,298 - -2.1 1,635,327 + +0.3 1,635,345 - -1.1 1,635,368 + -0.7 1,635,368 - +0.8 1,635,368 - -0.1 1,635,424 - -0.3 1,635,584 + PGA1_c15760 0.18 -3.0 1,635,654 - PGA1_c15760 0.24 -2.5 1,635,771 - PGA1_c15760 0.32 +1.0 1,635,772 - PGA1_c15760 0.32 -1.0 1,635,932 - PGA1_c15760 0.44 +1.7 1,635,932 - PGA1_c15760 0.44 +0.7 1,636,071 + PGA1_c15760 0.54 -2.2 1,636,126 - PGA1_c15760 0.58 +1.0 1,636,162 + PGA1_c15760 0.61 +0.1 1,636,171 + PGA1_c15760 0.61 -2.2
Or see this region's nucleotide sequence