Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1500 and HP15_1501 are separated by 30 nucleotides HP15_1501 and HP15_1502 are separated by 41 nucleotides HP15_1502 and HP15_tRNA28 are separated by 51 nucleotides HP15_tRNA28 and HP15_1503 are separated by 115 nucleotides
HP15_1500: HP15_1500 - sensory box/GGDEF family protein, at 1,576,858 to 1,579,287
_1500
HP15_1501: HP15_1501 - hypothetical protein, at 1,579,318 to 1,579,473
_1501
HP15_1502: HP15_1502 - conserved hypothetical protein, at 1,579,515 to 1,579,661
_1502
HP15_tRNA28: HP15_tRNA28 - tRNA-Glu, at 1,579,713 to 1,579,788
_tRNA28
HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830
_1503
Position (kb)
1579
1580 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1578.846 kb on + strand, within HP15_1500 at 1578.912 kb on + strand, within HP15_1500 at 1579.052 kb on + strand at 1579.071 kb on + strand at 1579.071 kb on + strand at 1579.078 kb on + strand at 1579.079 kb on - strand at 1579.155 kb on - strand at 1579.270 kb on + strand at 1579.432 kb on + strand, within HP15_1501 at 1579.446 kb on - strand, within HP15_1501 at 1579.536 kb on + strand, within HP15_1502 at 1579.952 kb on - strand at 1579.954 kb on + strand at 1580.096 kb on + strand, within HP15_1503 at 1580.096 kb on + strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.210 kb on + strand, within HP15_1503 at 1580.278 kb on + strand, within HP15_1503 at 1580.361 kb on - strand, within HP15_1503 at 1580.540 kb on - strand, within HP15_1503 at 1580.600 kb on + strand, within HP15_1503
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,578,846 + HP15_1500 0.82 +1.2 1,578,912 + HP15_1500 0.85 +0.1 1,579,052 + -0.2 1,579,071 + +1.4 1,579,071 + -1.9 1,579,078 + +0.2 1,579,079 - -0.3 1,579,155 - +1.0 1,579,270 + -0.2 1,579,432 + HP15_1501 0.73 -0.9 1,579,446 - HP15_1501 0.82 -1.6 1,579,536 + HP15_1502 0.14 +1.4 1,579,952 - -2.2 1,579,954 + +0.4 1,580,096 + HP15_1503 0.21 -0.2 1,580,096 + HP15_1503 0.21 -2.7 1,580,175 - HP15_1503 0.29 +2.4 1,580,175 - HP15_1503 0.29 -1.5 1,580,175 - HP15_1503 0.29 -2.3 1,580,175 - HP15_1503 0.29 +1.4 1,580,210 + HP15_1503 0.33 +0.4 1,580,278 + HP15_1503 0.40 -3.0 1,580,361 - HP15_1503 0.49 -2.9 1,580,540 - HP15_1503 0.69 +0.5 1,580,600 + HP15_1503 0.75 +0.4
Or see this region's nucleotide sequence