Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1478 and HP15_1479 are separated by 14 nucleotides HP15_1479 and HP15_1480 are separated by 29 nucleotides HP15_1480 and HP15_1481 are separated by 95 nucleotides
HP15_1478: HP15_1478 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,554,087 to 1,555,190
_1478
HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326
_1479
HP15_1480: HP15_1480 - preprotein translocase, YajC subunit, at 1,556,356 to 1,556,718
_1480
HP15_1481: HP15_1481 - preprotein translocase subunit SecD, at 1,556,814 to 1,558,688
_1481
Position (kb)
1555
1556
1557 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1554.223 kb on + strand, within HP15_1478 at 1554.272 kb on + strand, within HP15_1478 at 1554.458 kb on + strand, within HP15_1478 at 1554.483 kb on - strand, within HP15_1478 at 1554.498 kb on - strand, within HP15_1478 at 1554.578 kb on - strand, within HP15_1478 at 1554.768 kb on - strand, within HP15_1478 at 1555.282 kb on - strand at 1555.282 kb on - strand at 1555.305 kb on + strand at 1555.315 kb on + strand at 1555.385 kb on - strand, within HP15_1479 at 1555.385 kb on - strand, within HP15_1479 at 1555.401 kb on + strand, within HP15_1479 at 1555.409 kb on - strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.460 kb on + strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.931 kb on + strand, within HP15_1479 at 1556.000 kb on - strand, within HP15_1479 at 1556.071 kb on - strand, within HP15_1479 at 1556.278 kb on + strand at 1556.278 kb on + strand at 1556.556 kb on + strand, within HP15_1480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,554,223 + HP15_1478 0.12 +3.0 1,554,272 + HP15_1478 0.17 -2.7 1,554,458 + HP15_1478 0.34 +0.1 1,554,483 - HP15_1478 0.36 +0.1 1,554,498 - HP15_1478 0.37 +0.8 1,554,578 - HP15_1478 0.44 -1.2 1,554,768 - HP15_1478 0.62 -1.4 1,555,282 - +1.4 1,555,282 - +0.6 1,555,305 + +1.0 1,555,315 + -0.2 1,555,385 - HP15_1479 0.16 +0.5 1,555,385 - HP15_1479 0.16 +2.7 1,555,401 + HP15_1479 0.17 -0.2 1,555,409 - HP15_1479 0.18 +0.8 1,555,455 + HP15_1479 0.22 +0.1 1,555,455 + HP15_1479 0.22 +1.0 1,555,455 + HP15_1479 0.22 +0.3 1,555,460 + HP15_1479 0.23 +1.4 1,555,463 - HP15_1479 0.23 +1.1 1,555,463 - HP15_1479 0.23 -0.9 1,555,463 - HP15_1479 0.23 +0.8 1,555,463 - HP15_1479 0.23 -0.9 1,555,931 + HP15_1479 0.65 -0.2 1,556,000 - HP15_1479 0.71 +1.6 1,556,071 - HP15_1479 0.77 -0.1 1,556,278 + -0.5 1,556,278 + -0.0 1,556,556 + HP15_1480 0.55 +1.4
Or see this region's nucleotide sequence