Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1374 and HP15_1375 are separated by 19 nucleotides HP15_1375 and HP15_1376 are separated by 391 nucleotides HP15_1376 and HP15_1377 are separated by 57 nucleotides
HP15_1374: HP15_1374 - glutathione synthase/ribosomal protein S6 modification enzyme, at 1,448,426 to 1,449,973
_1374
HP15_1375: HP15_1375 - cation diffusion facilitator family transporter, at 1,449,993 to 1,451,151
_1375
HP15_1376: HP15_1376 - hypothetical protein, at 1,451,543 to 1,451,647
_1376
HP15_1377: HP15_1377 - dihydroorotate dehydrogenase, at 1,451,705 to 1,452,580
_1377
Position (kb)
1449
1450
1451
1452 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1449.100 kb on + strand, within HP15_1374 at 1449.186 kb on - strand, within HP15_1374 at 1449.304 kb on + strand, within HP15_1374 at 1449.445 kb on + strand, within HP15_1374 at 1449.603 kb on - strand, within HP15_1374 at 1449.913 kb on + strand at 1449.958 kb on + strand at 1450.011 kb on + strand at 1450.019 kb on - strand at 1450.093 kb on - strand at 1450.114 kb on - strand, within HP15_1375 at 1450.197 kb on - strand, within HP15_1375 at 1450.199 kb on + strand, within HP15_1375 at 1450.266 kb on + strand, within HP15_1375 at 1450.279 kb on + strand, within HP15_1375 at 1450.284 kb on + strand, within HP15_1375 at 1450.482 kb on - strand, within HP15_1375 at 1450.532 kb on - strand, within HP15_1375 at 1450.574 kb on + strand, within HP15_1375 at 1450.579 kb on + strand, within HP15_1375 at 1450.778 kb on - strand, within HP15_1375 at 1450.780 kb on + strand, within HP15_1375 at 1450.827 kb on - strand, within HP15_1375 at 1450.852 kb on + strand, within HP15_1375 at 1450.860 kb on - strand, within HP15_1375 at 1450.937 kb on - strand, within HP15_1375 at 1451.250 kb on - strand at 1451.752 kb on - strand at 1452.098 kb on - strand, within HP15_1377
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,449,100 + HP15_1374 0.44 -0.7 1,449,186 - HP15_1374 0.49 +1.1 1,449,304 + HP15_1374 0.57 -1.8 1,449,445 + HP15_1374 0.66 +1.8 1,449,603 - HP15_1374 0.76 -1.5 1,449,913 + +0.0 1,449,958 + -0.2 1,450,011 + +0.9 1,450,019 - -1.2 1,450,093 - -0.1 1,450,114 - HP15_1375 0.10 +0.4 1,450,197 - HP15_1375 0.18 -1.2 1,450,199 + HP15_1375 0.18 -0.7 1,450,266 + HP15_1375 0.24 -1.0 1,450,279 + HP15_1375 0.25 -1.9 1,450,284 + HP15_1375 0.25 -1.2 1,450,482 - HP15_1375 0.42 -3.4 1,450,532 - HP15_1375 0.47 +2.5 1,450,574 + HP15_1375 0.50 +0.1 1,450,579 + HP15_1375 0.51 -0.6 1,450,778 - HP15_1375 0.68 -2.0 1,450,780 + HP15_1375 0.68 -3.1 1,450,827 - HP15_1375 0.72 +2.4 1,450,852 + HP15_1375 0.74 -0.2 1,450,860 - HP15_1375 0.75 +0.7 1,450,937 - HP15_1375 0.81 +0.4 1,451,250 - -0.2 1,451,752 - -3.0 1,452,098 - HP15_1377 0.45 +1.2
Or see this region's nucleotide sequence