Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1334 and HP15_1335 are separated by 9 nucleotides HP15_1335 and HP15_1336 are separated by 116 nucleotides HP15_1336 and HP15_1337 are separated by 62 nucleotides HP15_1337 and HP15_1338 are separated by 469 nucleotides
HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data) , at 1,402,295 to 1,403,713
_1334
HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412
_1335
HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888
_1336
HP15_1337: HP15_1337 - conserved hypothetical protein, membrane, at 1,404,951 to 1,405,226
_1337
HP15_1338: HP15_1338 - conserved hypothetical protein, at 1,405,696 to 1,406,055
_1338
Position (kb)
1404
1405 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1403.605 kb on - strand at 1403.755 kb on - strand at 1403.780 kb on - strand at 1403.917 kb on - strand, within HP15_1335 at 1403.919 kb on + strand, within HP15_1335 at 1403.932 kb on + strand, within HP15_1335 at 1403.949 kb on - strand, within HP15_1335 at 1403.974 kb on + strand, within HP15_1335 at 1404.095 kb on + strand, within HP15_1335 at 1404.105 kb on + strand, within HP15_1335 at 1404.108 kb on - strand, within HP15_1335 at 1404.136 kb on + strand, within HP15_1335 at 1404.278 kb on + strand, within HP15_1335 at 1404.361 kb on + strand at 1404.381 kb on + strand at 1404.403 kb on - strand at 1404.549 kb on + strand at 1404.564 kb on - strand at 1404.571 kb on - strand, within HP15_1336 at 1404.710 kb on + strand, within HP15_1336 at 1404.718 kb on - strand, within HP15_1336 at 1404.847 kb on - strand, within HP15_1336 at 1404.847 kb on - strand, within HP15_1336 at 1404.876 kb on - strand at 1404.954 kb on + strand at 1404.990 kb on - strand, within HP15_1337 at 1405.034 kb on - strand, within HP15_1337 at 1405.271 kb on - strand at 1405.396 kb on + strand at 1405.401 kb on + strand at 1405.401 kb on + strand at 1405.409 kb on - strand at 1405.409 kb on - strand at 1405.409 kb on - strand at 1405.642 kb on + strand at 1405.684 kb on - strand at 1405.689 kb on - strand at 1405.713 kb on - strand at 1405.813 kb on - strand, within HP15_1338 at 1405.817 kb on + strand, within HP15_1338 at 1405.856 kb on + strand, within HP15_1338
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,403,605 - -2.5 1,403,755 - -0.0 1,403,780 - -1.9 1,403,917 - HP15_1335 0.28 -0.8 1,403,919 + HP15_1335 0.28 -0.7 1,403,932 + HP15_1335 0.30 +0.7 1,403,949 - HP15_1335 0.33 +1.4 1,403,974 + HP15_1335 0.36 +0.4 1,404,095 + HP15_1335 0.54 +0.4 1,404,105 + HP15_1335 0.55 +1.0 1,404,108 - HP15_1335 0.56 +1.1 1,404,136 + HP15_1335 0.60 -1.1 1,404,278 + HP15_1335 0.80 -0.4 1,404,361 + +0.5 1,404,381 + +0.7 1,404,403 - -2.6 1,404,549 + +2.1 1,404,564 - +0.1 1,404,571 - HP15_1336 0.12 -1.2 1,404,710 + HP15_1336 0.50 -2.7 1,404,718 - HP15_1336 0.53 -1.4 1,404,847 - HP15_1336 0.88 -1.4 1,404,847 - HP15_1336 0.88 +1.2 1,404,876 - +0.1 1,404,954 + +0.7 1,404,990 - HP15_1337 0.14 -1.6 1,405,034 - HP15_1337 0.30 -0.1 1,405,271 - -0.8 1,405,396 + -0.9 1,405,401 + -3.1 1,405,401 + +1.0 1,405,409 - -1.6 1,405,409 - +0.5 1,405,409 - -0.4 1,405,642 + -0.9 1,405,684 - +1.4 1,405,689 - -0.2 1,405,713 - -0.6 1,405,813 - HP15_1338 0.33 -0.2 1,405,817 + HP15_1338 0.34 -2.3 1,405,856 + HP15_1338 0.44 -0.9
Or see this region's nucleotide sequence