Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1204 and HP15_1205 are separated by 23 nucleotides HP15_1205 and HP15_1206 are separated by 145 nucleotides
HP15_1204: HP15_1204 - conserved hypothetical protein, at 1,245,307 to 1,246,170
_1204
HP15_1205: HP15_1205 - FOG: ankyrin repeat protein, at 1,246,194 to 1,248,944
_1205
HP15_1206: HP15_1206 - radical SAM domain protein, at 1,249,090 to 1,250,001
_1206
Position (kb)
1246
1247
1248
1249 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1245.205 kb on + strand at 1245.213 kb on - strand at 1245.259 kb on - strand at 1245.340 kb on + strand at 1245.529 kb on - strand, within HP15_1204 at 1245.576 kb on + strand, within HP15_1204 at 1245.604 kb on - strand, within HP15_1204 at 1245.645 kb on + strand, within HP15_1204 at 1245.874 kb on + strand, within HP15_1204 at 1245.884 kb on + strand, within HP15_1204 at 1245.892 kb on - strand, within HP15_1204 at 1245.892 kb on - strand, within HP15_1204 at 1245.939 kb on + strand, within HP15_1204 at 1245.961 kb on - strand, within HP15_1204 at 1246.048 kb on - strand, within HP15_1204 at 1246.183 kb on + strand at 1246.418 kb on + strand at 1246.512 kb on - strand, within HP15_1205 at 1246.562 kb on + strand, within HP15_1205 at 1246.668 kb on + strand, within HP15_1205 at 1246.785 kb on - strand, within HP15_1205 at 1246.827 kb on + strand, within HP15_1205 at 1246.909 kb on + strand, within HP15_1205 at 1246.924 kb on + strand, within HP15_1205 at 1246.945 kb on + strand, within HP15_1205 at 1246.980 kb on + strand, within HP15_1205 at 1246.988 kb on - strand, within HP15_1205 at 1247.207 kb on - strand, within HP15_1205 at 1247.207 kb on - strand, within HP15_1205 at 1247.212 kb on - strand, within HP15_1205 at 1247.286 kb on + strand, within HP15_1205 at 1247.449 kb on + strand, within HP15_1205 at 1247.456 kb on + strand, within HP15_1205 at 1247.657 kb on + strand, within HP15_1205 at 1247.761 kb on - strand, within HP15_1205 at 1247.797 kb on - strand, within HP15_1205 at 1247.814 kb on - strand, within HP15_1205 at 1247.821 kb on - strand, within HP15_1205 at 1247.858 kb on - strand, within HP15_1205 at 1247.919 kb on + strand, within HP15_1205 at 1248.032 kb on - strand, within HP15_1205 at 1248.247 kb on - strand, within HP15_1205 at 1248.252 kb on - strand, within HP15_1205 at 1248.433 kb on - strand, within HP15_1205 at 1248.570 kb on - strand, within HP15_1205 at 1248.664 kb on + strand, within HP15_1205 at 1248.857 kb on + strand at 1248.959 kb on + strand at 1249.006 kb on + strand at 1249.303 kb on + strand, within HP15_1206 at 1249.312 kb on + strand, within HP15_1206 at 1249.374 kb on - strand, within HP15_1206 at 1249.385 kb on - strand, within HP15_1206 at 1249.459 kb on + strand, within HP15_1206 at 1249.462 kb on - strand, within HP15_1206 at 1249.492 kb on + strand, within HP15_1206 at 1249.500 kb on - strand, within HP15_1206 at 1249.569 kb on + strand, within HP15_1206 at 1249.571 kb on + strand, within HP15_1206 at 1249.590 kb on + strand, within HP15_1206 at 1249.757 kb on - strand, within HP15_1206 at 1249.824 kb on + strand, within HP15_1206 at 1249.824 kb on - strand, within HP15_1206
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,245,205 + -2.1 1,245,213 - -0.1 1,245,259 - +1.4 1,245,340 + -0.1 1,245,529 - HP15_1204 0.26 -1.1 1,245,576 + HP15_1204 0.31 +0.4 1,245,604 - HP15_1204 0.34 +0.9 1,245,645 + HP15_1204 0.39 -3.1 1,245,874 + HP15_1204 0.66 +0.1 1,245,884 + HP15_1204 0.67 +1.4 1,245,892 - HP15_1204 0.68 -0.6 1,245,892 - HP15_1204 0.68 -0.9 1,245,939 + HP15_1204 0.73 -1.0 1,245,961 - HP15_1204 0.76 -0.5 1,246,048 - HP15_1204 0.86 -0.3 1,246,183 + -0.3 1,246,418 + -1.0 1,246,512 - HP15_1205 0.12 +3.4 1,246,562 + HP15_1205 0.13 -1.2 1,246,668 + HP15_1205 0.17 -2.1 1,246,785 - HP15_1205 0.21 -2.6 1,246,827 + HP15_1205 0.23 +1.1 1,246,909 + HP15_1205 0.26 -0.4 1,246,924 + HP15_1205 0.27 +1.2 1,246,945 + HP15_1205 0.27 -1.4 1,246,980 + HP15_1205 0.29 +0.4 1,246,988 - HP15_1205 0.29 -1.6 1,247,207 - HP15_1205 0.37 -1.0 1,247,207 - HP15_1205 0.37 -0.9 1,247,212 - HP15_1205 0.37 -0.1 1,247,286 + HP15_1205 0.40 -0.4 1,247,449 + HP15_1205 0.46 +0.4 1,247,456 + HP15_1205 0.46 -0.2 1,247,657 + HP15_1205 0.53 +0.4 1,247,761 - HP15_1205 0.57 -0.9 1,247,797 - HP15_1205 0.58 -0.5 1,247,814 - HP15_1205 0.59 +0.6 1,247,821 - HP15_1205 0.59 +0.4 1,247,858 - HP15_1205 0.60 -2.2 1,247,919 + HP15_1205 0.63 -0.4 1,248,032 - HP15_1205 0.67 -0.9 1,248,247 - HP15_1205 0.75 -0.6 1,248,252 - HP15_1205 0.75 +1.4 1,248,433 - HP15_1205 0.81 -2.7 1,248,570 - HP15_1205 0.86 -3.0 1,248,664 + HP15_1205 0.90 -1.6 1,248,857 + +0.0 1,248,959 + -1.1 1,249,006 + -2.3 1,249,303 + HP15_1206 0.23 -0.2 1,249,312 + HP15_1206 0.24 -0.1 1,249,374 - HP15_1206 0.31 -0.4 1,249,385 - HP15_1206 0.32 -0.3 1,249,459 + HP15_1206 0.40 -0.3 1,249,462 - HP15_1206 0.41 +1.4 1,249,492 + HP15_1206 0.44 -0.7 1,249,500 - HP15_1206 0.45 -0.3 1,249,569 + HP15_1206 0.53 -2.3 1,249,571 + HP15_1206 0.53 -0.5 1,249,590 + HP15_1206 0.55 +0.4 1,249,757 - HP15_1206 0.73 -1.2 1,249,824 + HP15_1206 0.80 -1.1 1,249,824 - HP15_1206 0.80 +0.0
Or see this region's nucleotide sequence