Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_110 and HP15_111 are separated by 17 nucleotides HP15_111 and HP15_112 are separated by 424 nucleotides
HP15_110: HP15_110 - heavy metal efflux pump, CzcA family, at 113,868 to 116,975
_110
HP15_111: HP15_111 - nitrogen regulatory protein PII-like protein, at 116,993 to 117,337
_111
HP15_112: HP15_112 - TonB-dependent receptor protein, at 117,762 to 119,873
_112
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 116.010 kb on + strand, within HP15_110 at 116.012 kb on + strand, within HP15_110 at 116.058 kb on - strand, within HP15_110 at 116.069 kb on + strand, within HP15_110 at 116.096 kb on - strand, within HP15_110 at 116.297 kb on - strand, within HP15_110 at 116.353 kb on + strand, within HP15_110 at 116.368 kb on + strand, within HP15_110 at 116.467 kb on - strand, within HP15_110 at 116.495 kb on - strand, within HP15_110 at 116.556 kb on + strand, within HP15_110 at 116.556 kb on + strand, within HP15_110 at 116.684 kb on - strand at 116.699 kb on + strand at 116.753 kb on + strand at 116.760 kb on + strand at 116.781 kb on + strand at 116.781 kb on + strand at 116.789 kb on - strand at 116.813 kb on - strand at 116.847 kb on - strand at 116.896 kb on + strand at 116.896 kb on + strand at 116.897 kb on - strand at 116.904 kb on - strand at 116.911 kb on + strand at 116.927 kb on - strand at 116.929 kb on + strand at 116.932 kb on - strand at 116.937 kb on - strand at 116.937 kb on - strand at 116.964 kb on + strand at 117.014 kb on - strand at 117.067 kb on - strand, within HP15_111 at 117.161 kb on - strand, within HP15_111 at 117.271 kb on + strand, within HP15_111 at 117.279 kb on - strand, within HP15_111 at 117.317 kb on + strand at 117.317 kb on + strand at 117.325 kb on - strand at 117.327 kb on + strand at 117.436 kb on - strand at 117.530 kb on - strand at 117.541 kb on - strand at 117.577 kb on - strand at 117.642 kb on + strand at 117.702 kb on + strand at 117.744 kb on - strand at 117.747 kb on + strand at 117.963 kb on + strand at 117.971 kb on - strand at 117.992 kb on - strand, within HP15_112 at 117.994 kb on - strand, within HP15_112 at 118.012 kb on - strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.083 kb on - strand, within HP15_112 at 118.098 kb on - strand, within HP15_112 at 118.111 kb on + strand, within HP15_112 at 118.119 kb on - strand, within HP15_112 at 118.119 kb on - strand, within HP15_112 at 118.125 kb on + strand, within HP15_112 at 118.144 kb on - strand, within HP15_112 at 118.151 kb on - strand, within HP15_112 at 118.156 kb on - strand, within HP15_112 at 118.174 kb on - strand, within HP15_112
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 116,010 + HP15_110 0.69 -4.4 116,012 + HP15_110 0.69 -1.3 116,058 - HP15_110 0.70 -1.0 116,069 + HP15_110 0.71 +0.3 116,096 - HP15_110 0.72 +1.1 116,297 - HP15_110 0.78 +0.3 116,353 + HP15_110 0.80 -2.0 116,368 + HP15_110 0.80 -0.7 116,467 - HP15_110 0.84 -0.1 116,495 - HP15_110 0.85 -0.5 116,556 + HP15_110 0.86 -2.7 116,556 + HP15_110 0.86 -0.2 116,684 - +1.3 116,699 + -0.7 116,753 + +2.1 116,760 + -1.0 116,781 + -0.2 116,781 + +0.3 116,789 - -0.3 116,813 - -2.8 116,847 - +0.2 116,896 + -0.4 116,896 + -1.7 116,897 - +0.4 116,904 - -0.5 116,911 + -0.4 116,927 - +1.3 116,929 + -0.7 116,932 - -2.8 116,937 - +0.7 116,937 - +0.0 116,964 + -0.8 117,014 - -0.7 117,067 - HP15_111 0.21 -1.7 117,161 - HP15_111 0.49 +1.1 117,271 + HP15_111 0.81 +0.3 117,279 - HP15_111 0.83 -1.5 117,317 + -0.4 117,317 + -0.4 117,325 - +1.3 117,327 + -1.1 117,436 - +0.1 117,530 - -0.4 117,541 - -2.5 117,577 - -1.4 117,642 + -1.0 117,702 + +1.3 117,744 - -0.5 117,747 + +0.8 117,963 + -1.8 117,971 - +0.9 117,992 - HP15_112 0.11 -0.3 117,994 - HP15_112 0.11 -0.3 118,012 - HP15_112 0.12 +0.2 118,075 + HP15_112 0.15 -2.1 118,075 + HP15_112 0.15 +1.3 118,075 + HP15_112 0.15 +1.3 118,075 + HP15_112 0.15 -0.3 118,083 - HP15_112 0.15 +0.8 118,098 - HP15_112 0.16 -0.6 118,111 + HP15_112 0.17 +1.4 118,119 - HP15_112 0.17 +0.4 118,119 - HP15_112 0.17 +0.2 118,125 + HP15_112 0.17 -1.8 118,144 - HP15_112 0.18 -1.7 118,151 - HP15_112 0.18 -0.3 118,156 - HP15_112 0.19 +0.6 118,174 - HP15_112 0.20 -2.0
Or see this region's nucleotide sequence