Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1027 and HP15_1028 are separated by 111 nucleotides HP15_1028 and HP15_1029 are separated by 4 nucleotides HP15_1029 and HP15_1030 are separated by 164 nucleotides
HP15_1027: HP15_1027 - chemotactic transducer-related protein, at 1,043,053 to 1,045,878
_1027
HP15_1028: HP15_1028 - alkylated DNA repair protein AlkB, at 1,045,990 to 1,046,640
_1028
HP15_1029: HP15_1029 - conserved hypothetical protein, membrane, at 1,046,645 to 1,047,925
_1029
HP15_1030: HP15_1030 - sulfate permease family protein, at 1,048,090 to 1,049,577
_1030
Position (kb)
1046
1047
1048 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1045.670 kb on - strand at 1045.690 kb on - strand at 1045.690 kb on - strand at 1045.692 kb on + strand at 1045.709 kb on - strand at 1045.848 kb on - strand at 1045.859 kb on + strand at 1045.892 kb on - strand at 1045.912 kb on - strand at 1045.950 kb on - strand at 1046.018 kb on + strand at 1046.128 kb on - strand, within HP15_1028 at 1046.142 kb on + strand, within HP15_1028 at 1046.150 kb on + strand, within HP15_1028 at 1046.184 kb on - strand, within HP15_1028 at 1046.184 kb on - strand, within HP15_1028 at 1046.197 kb on - strand, within HP15_1028 at 1046.202 kb on - strand, within HP15_1028 at 1046.303 kb on - strand, within HP15_1028 at 1046.394 kb on + strand, within HP15_1028 at 1046.402 kb on - strand, within HP15_1028 at 1046.419 kb on - strand, within HP15_1028 at 1046.488 kb on + strand, within HP15_1028 at 1046.581 kb on + strand at 1046.644 kb on - strand at 1046.741 kb on - strand at 1046.816 kb on + strand, within HP15_1029 at 1046.968 kb on + strand, within HP15_1029 at 1047.057 kb on + strand, within HP15_1029 at 1047.090 kb on + strand, within HP15_1029 at 1047.090 kb on + strand, within HP15_1029 at 1047.103 kb on - strand, within HP15_1029 at 1047.112 kb on - strand, within HP15_1029 at 1047.210 kb on - strand, within HP15_1029 at 1047.599 kb on + strand, within HP15_1029 at 1047.599 kb on + strand, within HP15_1029 at 1047.607 kb on - strand, within HP15_1029 at 1047.649 kb on - strand, within HP15_1029 at 1047.687 kb on + strand, within HP15_1029 at 1047.692 kb on + strand, within HP15_1029 at 1047.772 kb on - strand, within HP15_1029 at 1047.777 kb on - strand, within HP15_1029 at 1047.819 kb on - strand at 1047.822 kb on + strand at 1047.830 kb on - strand at 1047.830 kb on - strand at 1047.875 kb on + strand at 1047.920 kb on + strand at 1047.949 kb on - strand at 1048.148 kb on - strand at 1048.509 kb on - strand, within HP15_1030 at 1048.593 kb on + strand, within HP15_1030 at 1048.606 kb on + strand, within HP15_1030 at 1048.644 kb on + strand, within HP15_1030 at 1048.734 kb on + strand, within HP15_1030 at 1048.766 kb on - strand, within HP15_1030 at 1048.784 kb on - strand, within HP15_1030 at 1048.846 kb on - strand, within HP15_1030 at 1048.848 kb on + strand, within HP15_1030 at 1048.867 kb on + strand, within HP15_1030 at 1048.867 kb on + strand, within HP15_1030 at 1048.867 kb on + strand, within HP15_1030 at 1048.875 kb on - strand, within HP15_1030 at 1048.875 kb on - strand, within HP15_1030 at 1048.875 kb on - strand, within HP15_1030 at 1048.907 kb on - strand, within HP15_1030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 1,045,670 - -0.3 1,045,690 - -0.1 1,045,690 - -0.5 1,045,692 + -0.6 1,045,709 - +0.5 1,045,848 - -0.1 1,045,859 + -1.8 1,045,892 - -0.1 1,045,912 - -1.0 1,045,950 - +0.8 1,046,018 + -0.5 1,046,128 - HP15_1028 0.21 -0.7 1,046,142 + HP15_1028 0.23 -0.5 1,046,150 + HP15_1028 0.25 -1.7 1,046,184 - HP15_1028 0.30 -0.1 1,046,184 - HP15_1028 0.30 -0.8 1,046,197 - HP15_1028 0.32 -0.5 1,046,202 - HP15_1028 0.33 +0.5 1,046,303 - HP15_1028 0.48 -1.9 1,046,394 + HP15_1028 0.62 +1.5 1,046,402 - HP15_1028 0.63 +0.0 1,046,419 - HP15_1028 0.66 +0.8 1,046,488 + HP15_1028 0.76 +1.0 1,046,581 + +0.8 1,046,644 - -2.2 1,046,741 - +1.1 1,046,816 + HP15_1029 0.13 +3.1 1,046,968 + HP15_1029 0.25 +1.4 1,047,057 + HP15_1029 0.32 +1.2 1,047,090 + HP15_1029 0.35 +0.6 1,047,090 + HP15_1029 0.35 -2.0 1,047,103 - HP15_1029 0.36 -0.1 1,047,112 - HP15_1029 0.36 +0.3 1,047,210 - HP15_1029 0.44 -0.8 1,047,599 + HP15_1029 0.74 -3.1 1,047,599 + HP15_1029 0.74 +0.4 1,047,607 - HP15_1029 0.75 +0.3 1,047,649 - HP15_1029 0.78 +0.5 1,047,687 + HP15_1029 0.81 +0.1 1,047,692 + HP15_1029 0.82 +1.3 1,047,772 - HP15_1029 0.88 -2.1 1,047,777 - HP15_1029 0.88 -2.5 1,047,819 - +1.3 1,047,822 + -0.5 1,047,830 - -1.3 1,047,830 - +1.5 1,047,875 + -1.5 1,047,920 + -0.9 1,047,949 - +0.8 1,048,148 - +0.1 1,048,509 - HP15_1030 0.28 +0.8 1,048,593 + HP15_1030 0.34 -0.7 1,048,606 + HP15_1030 0.35 -2.0 1,048,644 + HP15_1030 0.37 -0.8 1,048,734 + HP15_1030 0.43 -1.5 1,048,766 - HP15_1030 0.45 +1.5 1,048,784 - HP15_1030 0.47 -1.3 1,048,846 - HP15_1030 0.51 +0.5 1,048,848 + HP15_1030 0.51 -1.6 1,048,867 + HP15_1030 0.52 -2.7 1,048,867 + HP15_1030 0.52 -1.1 1,048,867 + HP15_1030 0.52 -2.3 1,048,875 - HP15_1030 0.53 -1.3 1,048,875 - HP15_1030 0.53 -1.3 1,048,875 - HP15_1030 0.53 +0.5 1,048,907 - HP15_1030 0.55 -0.2
Or see this region's nucleotide sequence