Strain Fitness in Shewanella amazonensis SB2B around Sama_3285

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,902,103	+		Sama_3284	0.30	-0.7
3,902,104	-		Sama_3284	0.30	+1.6
3,902,104	-		Sama_3284	0.30	-1.3
3,902,111	+		Sama_3284	0.31	-1.7
3,902,111	+		Sama_3284	0.31	-3.3
3,902,112	-		Sama_3284	0.31	-3.9
3,902,149	-		Sama_3284	0.34	-1.3
3,902,164	+		Sama_3284	0.35	-0.7
3,902,164	+		Sama_3284	0.35	-2.0
3,902,165	-		Sama_3284	0.35	+0.1
3,902,188	+		Sama_3284	0.37	-1.5
3,902,189	-		Sama_3284	0.37	-1.5
3,902,203	+		Sama_3284	0.38	+1.1
3,902,214	+		Sama_3284	0.39	+2.2
3,902,214	+		Sama_3284	0.39	-1.4
3,902,215	-		Sama_3284	0.39	-1.9
3,902,215	-		Sama_3284	0.39	-3.6
3,902,237	+		Sama_3284	0.40	+0.3
3,902,237	+		Sama_3284	0.40	-0.9
3,902,237	+		Sama_3284	0.40	-4.0
3,902,237	+		Sama_3284	0.40	-0.5
3,902,237	+		Sama_3284	0.40	-0.3
3,902,237	+		Sama_3284	0.40	+0.7
3,902,237	+		Sama_3284	0.40	-0.2
3,902,238	-		Sama_3284	0.40	-0.4
3,902,238	-		Sama_3284	0.40	-1.8
3,902,238	-		Sama_3284	0.40	+0.5
3,902,304	+		Sama_3284	0.45	-3.0
3,902,437	-		Sama_3284	0.56	-2.1
3,902,437	-		Sama_3284	0.56	-2.2
3,902,437	-		Sama_3284	0.56	+0.9
3,902,437	-		Sama_3284	0.56	-2.6
3,902,471	+		Sama_3284	0.58	-2.5
3,902,471	+		Sama_3284	0.58	-2.1
3,902,472	-		Sama_3284	0.58	+1.5
3,902,472	-		Sama_3284	0.58	-1.6
3,902,500	-		Sama_3284	0.60	-5.0
3,902,523	+		Sama_3284	0.62	+0.1
3,902,632	-		Sama_3284	0.70	+2.3
3,902,632	-		Sama_3284	0.70	+3.7
3,902,656	+		Sama_3284	0.72	-2.6
3,902,656	+		Sama_3284	0.72	-2.1
3,902,656	+		Sama_3284	0.72	-2.3
3,902,657	-		Sama_3284	0.72	-0.7
3,902,673	+		Sama_3284	0.74	-3.3
3,902,694	+		Sama_3284	0.75	-1.5
3,902,694	+		Sama_3284	0.75	-2.3
3,902,695	-		Sama_3284	0.75	-3.4
3,902,695	-		Sama_3284	0.75	-2.1
3,902,706	+		Sama_3284	0.76	-2.7
3,902,730	+		Sama_3284	0.78	-3.2
3,902,731	-		Sama_3284	0.78	+1.5
3,902,731	-		Sama_3284	0.78	-2.1
3,902,731	-		Sama_3284	0.78	-4.0
3,902,731	-		Sama_3284	0.78	-3.0
3,902,740	+		Sama_3284	0.79	-2.0
3,902,741	-		Sama_3284	0.79	-2.9
3,902,741	-		Sama_3284	0.79	-1.6
3,902,742	+		Sama_3284	0.79	-1.3
3,902,743	-		Sama_3284	0.79	-3.0
3,902,743	-		Sama_3284	0.79	-2.9
3,902,763	+		Sama_3284	0.80	-2.8
3,902,764	-		Sama_3284	0.81	-2.1
3,902,764	-		Sama_3284	0.81	-2.7
3,902,764	-		Sama_3284	0.81	-1.6
3,902,772	+		Sama_3284	0.81	-1.7
3,902,773	-		Sama_3284	0.81	-0.1
3,902,824	+		Sama_3284	0.85	+1.1
3,902,825	-		Sama_3284	0.85	-3.3
3,902,825	-		Sama_3284	0.85	-2.2
3,903,055	+				-1.7
3,903,055	+				-0.7
3,903,056	-				-1.0
3,903,056	-				+0.5
3,903,065	+				-2.4
3,903,065	+				-2.2
3,903,065	+				-0.5
3,903,066	-				-0.9
3,903,066	-				+2.2
3,903,066	-				+0.0
3,903,099	-				+3.3
3,903,099	-				-0.1
3,903,104	+				-3.2
3,903,104	+				+2.8
3,903,104	+				-1.8
3,903,105	-				+0.4
3,903,105	-				+1.4
3,903,105	-				+0.5
3,903,110	-				+2.5
3,903,112	+				-2.3
3,903,112	+				+0.1
3,903,112	+				-1.7
3,903,112	+				-1.1
3,903,112	+				-0.2
3,903,112	+				+0.0
3,903,113	-				+1.5
3,903,113	-				-0.2
3,903,113	-				-0.9
3,903,114	+				-2.6
3,903,114	+				-1.3
3,903,114	+				+1.3
3,903,115	-				+0.2
3,903,117	-				+0.0
3,903,117	-				-0.5
3,903,117	-				+1.6
3,903,225	+		Sama_3285	0.16	-0.4
3,903,225	+		Sama_3285	0.16	+0.4
3,903,225	+		Sama_3285	0.16	+0.6
3,903,225	+		Sama_3285	0.16	+0.7
3,903,225	+		Sama_3285	0.16	-0.8
3,903,225	+		Sama_3285	0.16	-0.6
3,903,226	-		Sama_3285	0.16	-0.7
3,903,295	+		Sama_3285	0.24	+0.8
3,903,295	+		Sama_3285	0.24	-0.9
3,903,295	+		Sama_3285	0.24	+0.8
3,903,296	-		Sama_3285	0.25	-0.1
3,903,296	-		Sama_3285	0.25	-1.2
3,903,305	+		Sama_3285	0.26	-0.7
3,903,306	-		Sama_3285	0.26	+0.9
3,903,306	-		Sama_3285	0.26	+0.3
3,903,306	-		Sama_3285	0.26	+0.4
3,903,312	+		Sama_3285	0.26	-1.7
3,903,312	+		Sama_3285	0.26	-2.0
3,903,312	+		Sama_3285	0.26	-1.7
3,903,313	-		Sama_3285	0.27	+1.3
3,903,322	+		Sama_3285	0.28	-1.6
3,903,328	+		Sama_3285	0.28	-1.1
3,903,359	+		Sama_3285	0.32	-0.6
3,903,359	+		Sama_3285	0.32	-2.6
3,903,359	+		Sama_3285	0.32	-2.3
3,903,360	-		Sama_3285	0.32	-0.2
3,903,360	-		Sama_3285	0.32	-0.6
3,903,417	+		Sama_3285	0.40	+0.1
3,903,417	+		Sama_3285	0.40	-1.8
3,903,417	+		Sama_3285	0.40	-1.0
3,903,417	+		Sama_3285	0.40	+0.9
3,903,417	+		Sama_3285	0.40	-1.1
3,903,417	+		Sama_3285	0.40	-3.0
3,903,418	-		Sama_3285	0.40	-1.1
3,903,418	-		Sama_3285	0.40	+0.4
3,903,418	-		Sama_3285	0.40	+0.3
3,903,418	-		Sama_3285	0.40	+0.9
3,903,418	-		Sama_3285	0.40	+1.1
3,903,418	-		Sama_3285	0.40	-0.1
3,903,419	+		Sama_3285	0.40	-1.6
3,903,419	+		Sama_3285	0.40	-0.1
3,903,419	+		Sama_3285	0.40	+0.5
3,903,419	+		Sama_3285	0.40	+2.0
3,903,419	+		Sama_3285	0.40	+1.3
3,903,419	+		Sama_3285	0.40	-0.4
3,903,419	+		Sama_3285	0.40	-0.8
3,903,419	+		Sama_3285	0.40	+0.1
3,903,419	+		Sama_3285	0.40	-1.8
3,903,419	+		Sama_3285	0.40	-1.3
3,903,419	+		Sama_3285	0.40	+0.7
3,903,420	-		Sama_3285	0.40	+0.5
3,903,420	-		Sama_3285	0.40	-0.2
3,903,420	-		Sama_3285	0.40	-1.1
3,903,420	-		Sama_3285	0.40	-1.1
3,903,420	-		Sama_3285	0.40	-0.7
3,903,420	-		Sama_3285	0.40	-0.4
3,903,420	-		Sama_3285	0.40	-0.3
3,903,420	-		Sama_3285	0.40	+0.2
3,903,420	-		Sama_3285	0.40	-0.1
3,903,420	-		Sama_3285	0.40	+2.9
3,903,420	-		Sama_3285	0.40	-0.3
3,903,436	-		Sama_3285	0.42	+2.1
3,903,438	+		Sama_3285	0.42	-0.8
3,903,438	+		Sama_3285	0.42	+0.7
3,903,438	+		Sama_3285	0.42	+0.2
3,903,438	+		Sama_3285	0.42	-0.7
3,903,438	+		Sama_3285	0.42	-0.2
3,903,438	+		Sama_3285	0.42	+0.5
3,903,438	+		Sama_3285	0.42	-1.4
3,903,438	+		Sama_3285	0.42	+0.4
3,903,438	+		Sama_3285	0.42	-0.1
3,903,438	+		Sama_3285	0.42	-0.2
3,903,438	+		Sama_3285	0.42	+1.6
3,903,439	-		Sama_3285	0.42	+3.4
3,903,439	-		Sama_3285	0.42	-0.4
3,903,439	-		Sama_3285	0.42	-0.6
3,903,439	-		Sama_3285	0.42	+0.6
3,903,439	-		Sama_3285	0.42	+0.4
3,903,439	-		Sama_3285	0.42	+0.8
3,903,441	+		Sama_3285	0.43	-0.2
3,903,441	+		Sama_3285	0.43	+3.1
3,903,441	+		Sama_3285	0.43	+0.7
3,903,442	-		Sama_3285	0.43	+1.9
3,903,442	-		Sama_3285	0.43	+0.8
3,903,442	-		Sama_3285	0.43	+0.7
3,903,522	+		Sama_3285	0.53	+0.2
3,903,522	+		Sama_3285	0.53	+0.1
3,903,523	-		Sama_3285	0.53	+0.0
3,903,523	-		Sama_3285	0.53	+3.3
3,903,523	-		Sama_3285	0.53	-0.2
3,903,551	+		Sama_3285	0.56	+0.2
3,903,551	+		Sama_3285	0.56	+0.2
3,903,552	-		Sama_3285	0.56	-1.6
3,903,552	-		Sama_3285	0.56	+0.5
3,903,552	-		Sama_3285	0.56	+0.9
3,903,555	+		Sama_3285	0.57	-1.1
3,903,555	+		Sama_3285	0.57	+1.6
3,903,555	+		Sama_3285	0.57	+0.4
3,903,555	+		Sama_3285	0.57	-1.2
3,903,555	+		Sama_3285	0.57	+2.0
3,903,556	-		Sama_3285	0.57	-0.4
3,903,556	-		Sama_3285	0.57	+0.4
3,903,556	-		Sama_3285	0.57	+0.6
3,903,607	-		Sama_3285	0.63	-0.1
3,903,607	-		Sama_3285	0.63	-1.7
3,903,759	+		Sama_3285	0.82	-0.1
3,903,759	+		Sama_3285	0.82	-0.7
3,903,759	+		Sama_3285	0.82	-0.5
3,903,759	+		Sama_3285	0.82	+0.2
3,903,760	-		Sama_3285	0.82	-0.7
3,903,760	-		Sama_3285	0.82	-0.7
3,903,760	-		Sama_3285	0.82	+1.1
3,903,760	-		Sama_3285	0.82	-1.3
3,903,760	-		Sama_3285	0.82	-1.2
3,903,760	-		Sama_3285	0.82	+1.4
3,903,760	-		Sama_3285	0.82	+0.1
3,903,760	-		Sama_3285	0.82	+1.5
3,903,760	-		Sama_3285	0.82	+1.4
3,903,760	-		Sama_3285	0.82	-0.3
3,903,821	+		Sama_3285	0.90	+0.0
3,903,821	+		Sama_3285	0.90	-0.5
3,903,821	+		Sama_3285	0.90	+1.5
3,903,822	-				-1.5
3,903,900	+				+0.3
3,903,900	+				-0.8
3,903,901	-				-1.6
3,903,910	-				+0.6
3,903,924	+				+1.0
3,903,924	+				+1.6
3,903,924	+				-0.4
3,903,924	+				-0.7
3,903,924	+				+0.2
3,903,924	+				-1.8
3,903,924	+				+0.9
3,903,924	+				+0.6
3,903,924	+				-0.3
3,903,924	+				+1.9
3,903,924	+				-0.5
3,903,925	-				+0.5
3,903,925	-				+1.1
3,903,925	-				+0.1
3,903,925	-				-1.1
3,903,925	-				-1.0
3,903,925	-				+0.7
3,903,925	-				+1.0
3,903,925	-				+1.5
3,903,925	-				+0.5
3,903,925	-				-0.3
3,903,925	-				+1.1
3,903,925	-				-0.9
3,903,925	-				-1.5
3,903,925	-				-0.6
3,903,925	-				+0.4
3,903,925	-				+0.7
3,903,925	-				-1.2
3,903,925	-				-0.8
3,903,925	-				+0.7
3,903,925	-				-2.9
3,903,925	-				+0.2
3,903,925	-				-0.1
3,903,926	+				-1.2
3,903,927	-				-0.2
3,903,950	-				-0.5
3,903,950	-				-1.2
3,903,950	-				-0.0
3,904,034	-				+0.8
3,904,045	+				-0.6
3,904,045	+				+1.2
3,904,045	+				+2.2
3,904,046	-				+0.4
3,904,046	-				+1.1
3,904,046	-				-0.6
3,904,064	+				-0.1
3,904,065	-				-0.1
3,904,068	+				-0.2
3,904,068	+				+0.8
3,904,068	+				-0.7
3,904,069	-				+0.7
3,904,069	-				-0.6
3,904,069	-				+0.2
3,904,069	-				-1.1
3,904,114	+				-0.1
3,904,115	-				+1.6
3,904,115	-				-0.2
3,904,115	-				+0.2
3,904,115	-				-0.6
3,904,115	-				-0.2
3,904,151	+				+0.2
3,904,152	-				+0.6
3,904,178	+		Sama_3286	0.11	-1.2
3,904,178	+		Sama_3286	0.11	-0.1
3,904,178	+		Sama_3286	0.11	-1.4
3,904,179	-		Sama_3286	0.11	+1.0
3,904,179	-		Sama_3286	0.11	-0.7
3,904,179	-		Sama_3286	0.11	-0.1
3,904,218	-		Sama_3286	0.13	+1.8
3,904,218	-		Sama_3286	0.13	+0.5
3,904,218	-		Sama_3286	0.13	-0.3
3,904,218	-		Sama_3286	0.13	+1.3
3,904,253	+		Sama_3286	0.15	-0.8
3,904,253	+		Sama_3286	0.15	+2.9
3,904,253	+		Sama_3286	0.15	+0.3
3,904,253	+		Sama_3286	0.15	-0.7
3,904,253	+		Sama_3286	0.15	+1.5
3,904,253	+		Sama_3286	0.15	+0.7
3,904,253	+		Sama_3286	0.15	+3.5
3,904,254	-		Sama_3286	0.15	-0.5
3,904,254	-		Sama_3286	0.15	+0.6
3,904,279	+		Sama_3286	0.16	+0.5
3,904,365	+		Sama_3286	0.21	-0.1
3,904,365	+		Sama_3286	0.21	+3.3
3,904,365	+		Sama_3286	0.21	+0.3
3,904,365	+		Sama_3286	0.21	-0.4
3,904,365	+		Sama_3286	0.21	-1.6
3,904,365	+		Sama_3286	0.21	+0.7
3,904,365	+		Sama_3286	0.21	-1.5
3,904,366	-		Sama_3286	0.21	+0.6
3,904,366	-		Sama_3286	0.21	+0.9
3,904,366	-		Sama_3286	0.21	+2.3
3,904,366	-		Sama_3286	0.21	+0.8
3,904,366	-		Sama_3286	0.21	-0.2
3,904,366	-		Sama_3286	0.21	-2.0
3,904,366	-		Sama_3286	0.21	-0.5
3,904,366	-		Sama_3286	0.21	-1.2
3,904,366	-		Sama_3286	0.21	-0.9
3,904,366	-		Sama_3286	0.21	-1.2
3,904,366	-		Sama_3286	0.21	+1.2
3,904,369	+		Sama_3286	0.21	-1.7
3,904,369	+		Sama_3286	0.21	+2.3
3,904,369	+		Sama_3286	0.21	+1.8
3,904,370	-		Sama_3286	0.21	+0.7
3,904,370	-		Sama_3286	0.21	-0.1
3,904,370	-		Sama_3286	0.21	+0.4
3,904,370	-		Sama_3286	0.21	+0.0
3,904,370	-		Sama_3286	0.21	-0.7
3,904,370	-		Sama_3286	0.21	-0.9
3,904,377	+		Sama_3286	0.22	-0.6
3,904,377	+		Sama_3286	0.22	+0.6
3,904,378	-		Sama_3286	0.22	-0.2
3,904,378	-		Sama_3286	0.22	-1.8
3,904,378	-		Sama_3286	0.22	-0.7
3,904,412	+		Sama_3286	0.24	+2.3
3,904,412	+		Sama_3286	0.24	+1.0
3,904,413	-		Sama_3286	0.24	-1.8
3,904,413	-		Sama_3286	0.24	+0.1
3,904,466	-		Sama_3286	0.27	+0.1
3,904,466	-		Sama_3286	0.27	+2.9
3,904,466	-		Sama_3286	0.27	+0.8
3,904,570	+		Sama_3286	0.33	+0.1
3,904,610	+		Sama_3286	0.35	-0.7
3,904,610	+		Sama_3286	0.35	+1.7
3,904,610	+		Sama_3286	0.35	+0.1
3,904,610	+		Sama_3286	0.35	-0.2
3,904,611	-		Sama_3286	0.35	-0.1
3,904,611	-		Sama_3286	0.35	-0.2
3,904,611	-		Sama_3286	0.35	+2.6
3,904,611	-		Sama_3286	0.35	+0.8
3,904,611	-		Sama_3286	0.35	+0.2
3,904,611	-		Sama_3286	0.35	-0.8
3,904,611	-		Sama_3286	0.35	-0.5
3,904,611	-		Sama_3286	0.35	-0.0
3,904,611	-		Sama_3286	0.35	+0.0
3,904,611	-		Sama_3286	0.35	-1.5
3,904,735	+		Sama_3286	0.42	-1.0
3,904,735	+		Sama_3286	0.42	+0.0
3,904,735	+		Sama_3286	0.42	-1.2
3,904,735	+		Sama_3286	0.42	-0.9
3,904,736	-		Sama_3286	0.42	-0.3
3,904,736	-		Sama_3286	0.42	+0.3
3,904,736	-		Sama_3286	0.42	+1.8
3,904,736	-		Sama_3286	0.42	-0.0
3,904,736	-		Sama_3286	0.42	+0.6
3,904,736	-		Sama_3286	0.42	-0.1
3,904,736	-		Sama_3286	0.42	+0.1
3,904,736	-		Sama_3286	0.42	-0.0
3,904,736	-		Sama_3286	0.42	+0.3
3,904,736	-		Sama_3286	0.42	-0.9
3,904,736	-		Sama_3286	0.42	-0.1
3,904,736	-		Sama_3286	0.42	-0.2
3,904,736	-		Sama_3286	0.42	+0.9
3,904,736	-		Sama_3286	0.42	+1.2
3,904,736	-		Sama_3286	0.42	+0.4
3,904,736	-		Sama_3286	0.42	-0.4
3,904,737	+		Sama_3286	0.42	-0.3
3,904,737	+		Sama_3286	0.42	+0.1
3,904,737	+		Sama_3286	0.42	+0.7
3,904,737	+		Sama_3286	0.42	+1.3
3,904,737	+		Sama_3286	0.42	-1.0
3,904,738	-		Sama_3286	0.42	-0.3
3,904,738	-		Sama_3286	0.42	-0.5
3,904,738	-		Sama_3286	0.42	+0.2
3,904,738	-		Sama_3286	0.42	-0.1
3,904,738	-		Sama_3286	0.42	+0.6
3,904,743	+		Sama_3286	0.42	+1.2
3,904,744	-		Sama_3286	0.42	+2.7
3,904,795	+		Sama_3286	0.45	+0.7
3,904,795	+		Sama_3286	0.45	+3.3
3,904,796	-		Sama_3286	0.45	-0.4
3,904,796	-		Sama_3286	0.45	-1.2
3,904,796	-		Sama_3286	0.45	+0.4
3,904,796	-		Sama_3286	0.45	-0.5
3,904,821	-		Sama_3286	0.47	+0.5
3,904,821	-		Sama_3286	0.47	+0.9
3,904,835	-		Sama_3286	0.47	+0.6
3,904,893	+		Sama_3286	0.51	+1.9
3,904,893	+		Sama_3286	0.51	-1.1
3,904,894	-		Sama_3286	0.51	+1.7
3,904,894	-		Sama_3286	0.51	-0.1
3,904,894	-		Sama_3286	0.51	-0.1
3,904,894	-		Sama_3286	0.51	-0.5