Strain Fitness in Shewanella amazonensis SB2B around Sama_3183

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,774,243	+		Sama_3182	0.59	-1.2
3,774,243	+		Sama_3182	0.59	-0.1
3,774,300	-		Sama_3182	0.63	-0.8
3,774,300	-		Sama_3182	0.63	-0.2
3,774,300	-		Sama_3182	0.63	-0.3
3,774,300	-		Sama_3182	0.63	-0.2
3,774,321	+		Sama_3182	0.64	+0.2
3,774,322	-		Sama_3182	0.64	+0.1
3,774,322	-		Sama_3182	0.64	-1.5
3,774,390	+		Sama_3182	0.67	-0.1
3,774,390	+		Sama_3182	0.67	+0.1
3,774,390	+		Sama_3182	0.67	-0.3
3,774,391	-		Sama_3182	0.68	-0.3
3,774,391	-		Sama_3182	0.68	-2.0
3,774,391	-		Sama_3182	0.68	+1.1
3,774,391	-		Sama_3182	0.68	-1.1
3,774,391	-		Sama_3182	0.68	-0.2
3,774,394	-		Sama_3182	0.68	+0.2
3,774,425	+		Sama_3182	0.69	-0.0
3,774,425	+		Sama_3182	0.69	+0.1
3,774,425	+		Sama_3182	0.69	-0.6
3,774,425	+		Sama_3182	0.69	+0.9
3,774,425	+		Sama_3182	0.69	-0.7
3,774,425	+		Sama_3182	0.69	+0.5
3,774,525	-		Sama_3182	0.75	+0.3
3,774,582	+		Sama_3182	0.78	-0.9
3,774,583	-		Sama_3182	0.78	+1.9
3,774,610	+		Sama_3182	0.80	-1.6
3,774,610	+		Sama_3182	0.80	-1.1
3,774,611	-		Sama_3182	0.80	+2.7
3,774,611	-		Sama_3182	0.80	-0.5
3,774,611	-		Sama_3182	0.80	-1.2
3,774,625	+		Sama_3182	0.80	+0.9
3,774,625	+		Sama_3182	0.80	+0.1
3,774,625	+		Sama_3182	0.80	-0.4
3,774,626	-		Sama_3182	0.80	+0.8
3,774,626	-		Sama_3182	0.80	-0.5
3,774,626	-		Sama_3182	0.80	+0.2
3,774,632	+		Sama_3182	0.81	-0.8
3,774,632	+		Sama_3182	0.81	-1.5
3,774,632	+		Sama_3182	0.81	+0.6
3,774,633	-		Sama_3182	0.81	+1.1
3,774,633	-		Sama_3182	0.81	-1.6
3,774,633	-		Sama_3182	0.81	-1.4
3,774,633	-		Sama_3182	0.81	-0.1
3,774,633	-		Sama_3182	0.81	-0.5
3,774,633	-		Sama_3182	0.81	+1.4
3,774,633	-		Sama_3182	0.81	+0.1
3,774,633	-		Sama_3182	0.81	-0.5
3,774,729	+		Sama_3182	0.86	-0.1
3,774,730	-		Sama_3182	0.86	+0.2
3,774,730	-		Sama_3182	0.86	+1.5
3,774,730	-		Sama_3182	0.86	+0.2
3,774,730	-		Sama_3182	0.86	-1.8
3,774,730	-		Sama_3182	0.86	+0.9
3,774,730	-		Sama_3182	0.86	+4.0
3,774,824	+				+1.2
3,774,824	+				+0.1
3,774,824	+				-0.9
3,774,824	+				-1.9
3,774,824	+				-0.7
3,774,824	+				-1.8
3,774,825	-				+1.8
3,774,825	-				+0.6
3,774,825	-				+2.0
3,774,825	-				-0.4
3,774,880	+				-1.4
3,774,881	-				+0.0
3,774,881	-				-0.1
3,774,881	-				+0.5
3,774,958	+				+1.0
3,774,959	-				+0.8
3,774,989	+				-0.6
3,774,990	-				+0.1
3,775,002	+				-0.1
3,775,002	+				+0.9
3,775,003	-				+1.9
3,775,003	-				+0.5
3,775,003	-				-0.9
3,775,003	-				-0.1
3,775,052	-				+0.4
3,775,146	+				-0.4
3,775,147	-				-1.2
3,775,147	-				-0.5
3,775,147	-				-0.3
3,775,147	-				-2.5
3,775,147	-				-0.0
3,775,147	-				-0.2
3,775,147	-				-1.9
3,775,198	+				+0.5
3,775,198	+				-0.1
3,775,198	+				-0.4
3,775,198	+				-0.6
3,775,198	+				-0.6
3,775,198	+				+0.1
3,775,198	+				+1.8
3,775,198	+				-0.3
3,775,198	+				-0.5
3,775,198	+				+2.2
3,775,198	+				-0.9
3,775,199	-				-1.2
3,775,199	-				-0.7
3,775,199	-				-3.8
3,775,199	-				-1.0
3,775,199	-				-0.0
3,775,199	-				+0.1
3,775,199	-				-0.6
3,775,199	-				-1.1
3,775,199	-				-1.2
3,775,200	+				+1.4
3,775,200	+				-0.0
3,775,200	+				-0.8
3,775,200	+				+0.0
3,775,200	+				-0.8
3,775,200	+				+0.9
3,775,200	+				-2.3
3,775,200	+				+2.0
3,775,200	+				+0.8
3,775,200	+				-0.2
3,775,200	+				+3.9
3,775,200	+				+0.4
3,775,200	+				+0.1
3,775,201	-				-0.8
3,775,201	-				+1.6
3,775,201	-				+1.6
3,775,201	-				-0.5
3,775,201	-				-1.0
3,775,201	-				-0.8
3,775,201	-				-0.6
3,775,305	+		Sama_3183	0.27	-1.4
3,775,306	-		Sama_3183	0.28	-0.3
3,775,306	-		Sama_3183	0.28	-0.4
3,775,306	-		Sama_3183	0.28	+0.4
3,775,486	-		Sama_3183	0.59	-1.2
3,775,513	+		Sama_3183	0.64	-0.3
3,775,624	+		Sama_3183	0.83	+0.0
3,775,624	+		Sama_3183	0.83	-0.8
3,775,624	+		Sama_3183	0.83	+0.8
3,775,624	+		Sama_3183	0.83	-0.2
3,775,624	+		Sama_3183	0.83	+0.6
3,775,625	-		Sama_3183	0.83	-1.4
3,775,625	-		Sama_3183	0.83	-1.6
3,775,625	-		Sama_3183	0.83	-0.6
3,775,649	+		Sama_3183	0.87	+2.0
3,775,649	+		Sama_3183	0.87	+0.9
3,775,649	+		Sama_3183	0.87	-0.0
3,775,649	+		Sama_3183	0.87	+1.3
3,775,649	+		Sama_3183	0.87	-2.3
3,775,649	+		Sama_3183	0.87	+2.6
3,775,649	+		Sama_3183	0.87	-0.5
3,775,650	-		Sama_3183	0.87	+2.0
3,775,650	-		Sama_3183	0.87	-0.4
3,775,682	+				-0.3
3,775,769	+				-0.7
3,775,769	+				-0.9
3,775,769	+				+0.3
3,775,769	+				-0.7
3,775,769	+				+0.3
3,775,769	+				-0.5
3,775,769	+				+2.0
3,775,769	+				+3.3
3,775,770	-				-0.5
3,775,770	-				-0.7
3,775,770	-				+0.7
3,775,770	-				-0.2
3,775,770	-				-0.9
3,775,770	-				-2.3
3,775,770	-				-0.6
3,775,770	-				-0.0
3,775,826	-				-2.5
3,775,826	-				+0.3
3,775,876	-				-0.2
3,775,908	+				+0.1
3,775,908	+				-0.5
3,775,908	+				-1.8
3,775,908	+				-1.0
3,775,908	+				-0.2
3,775,908	+				+0.3
3,775,909	-				-0.1
3,775,909	-				-0.8
3,775,909	-				+1.2
3,775,909	-				+1.2
3,775,953	+				-0.4
3,775,954	-				-0.6
3,775,954	-				-1.6
3,775,971	+				-0.4
3,776,005	-				+1.8
3,776,005	-				-0.5
3,776,006	+				+1.1
3,776,007	-				+0.2
3,776,007	-				+0.7
3,776,104	-				-0.2
3,776,104	-				+0.4
3,776,104	-				-0.1
3,776,104	-				+0.3
3,776,118	-				-0.3
3,776,152	+				+0.8
3,776,152	+				-0.5
3,776,161	+				-1.0
3,776,162	-				-0.4
3,776,162	-				+1.1
3,776,162	-				-0.2
3,776,201	+		Sama_3184	0.12	-1.8
3,776,201	+		Sama_3184	0.12	+0.3
3,776,202	-		Sama_3184	0.12	-2.5
3,776,202	-		Sama_3184	0.12	+0.1
3,776,202	-		Sama_3184	0.12	+0.0
3,776,213	+		Sama_3184	0.15	+0.1
3,776,213	+		Sama_3184	0.15	+0.2
3,776,213	+		Sama_3184	0.15	-0.0
3,776,214	-		Sama_3184	0.15	+3.2
3,776,235	+		Sama_3184	0.19	+1.6
3,776,236	-		Sama_3184	0.19	+0.7
3,776,236	-		Sama_3184	0.19	-2.0
3,776,255	+		Sama_3184	0.23	+2.4
3,776,255	+		Sama_3184	0.23	+3.0
3,776,255	+		Sama_3184	0.23	+2.5
3,776,255	+		Sama_3184	0.23	-0.3
3,776,256	-		Sama_3184	0.24	-0.3
3,776,439	+		Sama_3184	0.61	-0.8
3,776,439	+		Sama_3184	0.61	-0.7
3,776,440	-		Sama_3184	0.61	-1.1
3,776,440	-		Sama_3184	0.61	-1.9
3,776,468	+		Sama_3184	0.67	+0.4
3,776,468	+		Sama_3184	0.67	+0.7
3,776,469	-		Sama_3184	0.67	-0.7
3,776,469	-		Sama_3184	0.67	+0.4
3,776,469	-		Sama_3184	0.67	-2.2
3,776,469	-		Sama_3184	0.67	+0.4
3,776,469	-		Sama_3184	0.67	+0.2
3,776,469	-		Sama_3184	0.67	+0.5
3,776,502	+		Sama_3184	0.74	-0.5
3,776,502	+		Sama_3184	0.74	+0.0
3,776,502	+		Sama_3184	0.74	-0.2
3,776,502	+		Sama_3184	0.74	+0.4
3,776,502	+		Sama_3184	0.74	-0.6
3,776,502	+		Sama_3184	0.74	+3.3
3,776,502	+		Sama_3184	0.74	+0.0
3,776,503	-		Sama_3184	0.74	+0.6
3,776,503	-		Sama_3184	0.74	-0.8
3,776,503	-		Sama_3184	0.74	+0.9
3,776,503	-		Sama_3184	0.74	-0.8
3,776,503	-		Sama_3184	0.74	-0.4
3,776,503	-		Sama_3184	0.74	-0.9
3,776,572	+		Sama_3184	0.88	-1.4
3,776,572	+		Sama_3184	0.88	-0.5
3,776,582	-				-0.2
3,776,601	-				+0.2
3,776,662	+				-1.7
3,776,662	+				-1.8
3,776,662	+				+0.6
3,776,663	-				-1.4
3,776,663	-				+3.0
3,776,663	-				-1.7
3,776,663	-				-2.5
3,776,663	-				-0.8
3,776,663	-				-1.2
3,776,663	-				+4.7
3,776,663	-				+0.3
3,776,664	+				+3.5
3,776,665	-				+0.9
3,776,665	-				+0.7
3,776,665	-				+2.3
3,776,683	+				+1.8
3,776,683	+				-0.9
3,776,683	+				+2.4
3,776,684	-				-0.7
3,776,684	-				-0.2
3,776,701	-				+1.4