Strain Fitness in Shewanella amazonensis SB2B around Sama_3141

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,727,636	+				+0.5
3,727,636	+				-0.1
3,727,636	+				-0.6
3,727,637	-				-1.5
3,727,638	+				+0.4
3,727,638	+				-0.1
3,727,638	+				-1.5
3,727,639	-				-0.7
3,727,639	-				+0.3
3,727,639	-				+2.6
3,727,639	-				-0.5
3,727,639	-				+1.3
3,727,676	+				+1.8
3,727,676	+				+1.0
3,727,677	-				-0.0
3,727,704	+				+2.0
3,727,704	+				+0.2
3,727,705	-				-0.4
3,727,705	-				+0.2
3,727,715	+				+0.8
3,727,716	-				+1.9
3,727,716	-				-0.7
3,727,716	-				+0.0
3,727,716	-				-1.0
3,727,730	-				-0.6
3,727,873	+				+1.0
3,727,874	-				+0.3
3,727,928	+		Sama_3140	0.15	-1.2
3,727,949	+		Sama_3140	0.18	-1.3
3,727,983	+		Sama_3140	0.22	-1.9
3,727,983	+		Sama_3140	0.22	-0.2
3,727,984	-		Sama_3140	0.22	-1.7
3,728,013	+		Sama_3140	0.26	-0.2
3,728,014	-		Sama_3140	0.26	+3.1
3,728,014	-		Sama_3140	0.26	-1.1
3,728,014	-		Sama_3140	0.26	-2.3
3,728,027	+		Sama_3140	0.28	-0.9
3,728,027	+		Sama_3140	0.28	-2.4
3,728,027	+		Sama_3140	0.28	-0.2
3,728,027	+		Sama_3140	0.28	+1.6
3,728,028	-		Sama_3140	0.28	-0.7
3,728,078	+		Sama_3140	0.35	-0.1
3,728,078	+		Sama_3140	0.35	-1.0
3,728,079	-		Sama_3140	0.35	-2.5
3,728,079	-		Sama_3140	0.35	-0.3
3,728,098	+		Sama_3140	0.37	-0.5
3,728,140	+		Sama_3140	0.43	-0.9
3,728,156	+		Sama_3140	0.45	-1.4
3,728,156	+		Sama_3140	0.45	-0.8
3,728,157	-		Sama_3140	0.45	-0.7
3,728,157	-		Sama_3140	0.45	-1.7
3,728,157	-		Sama_3140	0.45	-0.2
3,728,157	-		Sama_3140	0.45	+0.2
3,728,157	-		Sama_3140	0.45	-0.9
3,728,270	+		Sama_3140	0.60	+0.1
3,728,270	+		Sama_3140	0.60	-1.9
3,728,270	+		Sama_3140	0.60	+0.9
3,728,270	+		Sama_3140	0.60	-1.2
3,728,270	+		Sama_3140	0.60	-1.0
3,728,270	+		Sama_3140	0.60	+0.1
3,728,270	+		Sama_3140	0.60	+0.6
3,728,270	+		Sama_3140	0.60	-0.8
3,728,270	+		Sama_3140	0.60	-1.5
3,728,271	-		Sama_3140	0.60	-0.6
3,728,271	-		Sama_3140	0.60	+0.5
3,728,475	+		Sama_3140	0.87	-1.2
3,728,475	+		Sama_3140	0.87	-1.2
3,728,475	+		Sama_3140	0.87	-0.5
3,728,475	+		Sama_3140	0.87	+0.8
3,728,476	-		Sama_3140	0.87	+0.5
3,728,476	-		Sama_3140	0.87	-1.0
3,728,476	-		Sama_3140	0.87	-0.4
3,728,476	-		Sama_3140	0.87	-0.9
3,728,476	-		Sama_3140	0.87	-0.7
3,728,476	-		Sama_3140	0.87	-0.3
3,728,476	-		Sama_3140	0.87	-0.1
3,728,479	+		Sama_3140	0.88	+3.9
3,728,479	+		Sama_3140	0.88	-1.0
3,728,480	-		Sama_3140	0.88	+0.3
3,728,505	+				-1.0
3,728,505	+				-1.5
3,728,505	+				-1.5
3,728,505	+				-1.0
3,728,505	+				-1.2
3,728,505	+				-0.7
3,728,506	-				-0.6
3,728,506	-				-1.6
3,728,506	-				-1.0
3,728,506	-				+1.3
3,728,506	-				-0.3
3,728,506	-				-2.1
3,728,506	-				+0.2
3,728,506	-				-0.1
3,728,509	+				+0.1
3,728,509	+				-0.5
3,728,509	+				-1.2
3,728,509	+				+0.7
3,728,510	-				-2.3
3,728,510	-				-0.3
3,728,510	-				+0.2
3,728,510	-				+2.2
3,728,518	+				-0.9
3,728,545	+				+1.4
3,728,545	+				-0.9
3,728,545	+				-0.3
3,728,545	+				-1.0
3,728,545	+				-1.5
3,728,545	+				+1.0
3,728,545	+				-1.1
3,728,545	+				-1.1
3,728,545	+				+0.3
3,728,545	+				-0.7
3,728,546	-				+0.7
3,728,546	-				-2.6
3,728,546	-				-0.1
3,728,546	-				-2.6
3,728,546	-				+2.2
3,728,571	+				-0.8
3,728,571	+				-1.4
3,728,571	+				-1.5
3,728,571	+				-0.7
3,728,571	+				+0.1
3,728,571	+				-0.5
3,728,572	-				-1.6
3,728,572	-				+0.6
3,728,572	-				-2.4
3,728,572	-				-0.6
3,728,572	-				-0.6
3,728,572	-				+1.1
3,728,598	+				+1.1
3,728,612	+				+1.0
3,728,613	-				+0.5
3,728,613	-				-0.9
3,728,613	-				-0.9
3,728,673	+		Sama_3141	0.11	-1.6
3,728,723	+		Sama_3141	0.16	-1.5
3,728,723	+		Sama_3141	0.16	+1.7
3,728,723	+		Sama_3141	0.16	-0.9
3,728,723	+		Sama_3141	0.16	-0.0
3,728,724	-		Sama_3141	0.16	-0.7
3,728,839	+		Sama_3141	0.29	+1.1
3,728,861	+		Sama_3141	0.31	+1.1
3,728,862	-		Sama_3141	0.32	+0.0
3,728,879	+		Sama_3141	0.33	-1.9
3,728,879	+		Sama_3141	0.33	-0.5
3,728,879	+		Sama_3141	0.33	-0.5
3,728,880	-		Sama_3141	0.34	-0.2
3,728,978	+		Sama_3141	0.44	-0.1
3,728,978	+		Sama_3141	0.44	-0.3
3,728,978	+		Sama_3141	0.44	-0.0
3,728,978	+		Sama_3141	0.44	-0.2
3,728,978	+		Sama_3141	0.44	-0.0
3,728,978	+		Sama_3141	0.44	+0.2
3,728,978	+		Sama_3141	0.44	-0.5
3,728,978	+		Sama_3141	0.44	-1.0
3,728,978	+		Sama_3141	0.44	-0.0
3,728,979	-		Sama_3141	0.44	+2.0
3,728,979	-		Sama_3141	0.44	-1.4
3,728,979	-		Sama_3141	0.44	+0.3
3,728,979	-		Sama_3141	0.44	+0.3
3,728,979	-		Sama_3141	0.44	+1.8
3,728,979	-		Sama_3141	0.44	-1.0
3,728,979	-		Sama_3141	0.44	-0.8
3,728,979	-		Sama_3141	0.44	-1.2
3,728,979	-		Sama_3141	0.44	+1.7
3,728,988	+		Sama_3141	0.45	-1.5
3,728,988	+		Sama_3141	0.45	-0.8
3,728,988	+		Sama_3141	0.45	-0.4
3,728,989	-		Sama_3141	0.46	-0.5
3,728,989	-		Sama_3141	0.46	+0.2
3,728,989	-		Sama_3141	0.46	-0.6
3,729,009	+		Sama_3141	0.48	+0.8
3,729,010	-		Sama_3141	0.48	-0.4
3,729,010	-		Sama_3141	0.48	-1.0
3,729,010	-		Sama_3141	0.48	-0.2
3,729,021	+		Sama_3141	0.49	+0.1
3,729,088	+		Sama_3141	0.56	+0.7
3,729,088	+		Sama_3141	0.56	-1.1
3,729,088	+		Sama_3141	0.56	-0.3
3,729,088	+		Sama_3141	0.56	-0.8
3,729,088	+		Sama_3141	0.56	-0.7
3,729,088	+		Sama_3141	0.56	-0.7
3,729,088	+		Sama_3141	0.56	-2.0
3,729,088	+		Sama_3141	0.56	-0.6
3,729,088	+		Sama_3141	0.56	-1.2
3,729,088	+		Sama_3141	0.56	+0.1
3,729,088	+		Sama_3141	0.56	-0.6
3,729,088	+		Sama_3141	0.56	+0.1
3,729,089	-		Sama_3141	0.57	+0.9
3,729,089	-		Sama_3141	0.57	-1.0
3,729,089	-		Sama_3141	0.57	-0.5
3,729,089	-		Sama_3141	0.57	-0.4
3,729,089	-		Sama_3141	0.57	-1.6
3,729,089	-		Sama_3141	0.57	+0.8
3,729,089	-		Sama_3141	0.57	-0.9
3,729,089	-		Sama_3141	0.57	-1.1
3,729,089	-		Sama_3141	0.57	-0.1
3,729,089	-		Sama_3141	0.57	+1.1
3,729,089	-		Sama_3141	0.57	+0.2
3,729,089	-		Sama_3141	0.57	-0.8
3,729,089	-		Sama_3141	0.57	-0.1
3,729,089	-		Sama_3141	0.57	+1.3
3,729,153	-		Sama_3141	0.64	-0.3
3,729,277	+		Sama_3141	0.77	+0.4
3,729,335	+		Sama_3141	0.84	+2.7
3,729,335	+		Sama_3141	0.84	-1.1
3,729,335	+		Sama_3141	0.84	-0.5
3,729,335	+		Sama_3141	0.84	+0.5
3,729,399	+				+0.2
3,729,400	-				-1.3
3,729,465	+				-0.5
3,729,499	+				-0.5
3,729,499	+				-1.3
3,729,499	+				+1.3
3,729,499	+				-1.8
3,729,499	+				-1.3
3,729,499	+				-2.7
3,729,499	+				-0.2
3,729,500	-				-1.9
3,729,500	-				-1.1
3,729,500	-				-0.7
3,729,500	-				-0.8
3,729,500	-				-0.5
3,729,500	-				-1.5
3,729,504	+				-0.6
3,729,504	+				-1.0
3,729,504	+				-2.8
3,729,504	+				-1.3
3,729,504	+				-1.6
3,729,504	+				-1.6
3,729,504	+				-0.2
3,729,504	+				-1.6
3,729,505	-				-1.6
3,729,505	-				-1.9
3,729,505	-				-0.2
3,729,505	-				+0.2
3,729,505	-				-0.9
3,729,505	-				-1.4
3,729,505	-				-0.2
3,729,505	-				+0.7
3,729,505	-				+1.0
3,729,505	-				-1.0
3,729,505	-				-0.4
3,729,505	-				+1.8
3,729,567	+				+0.2
3,729,567	+				+0.7
3,729,567	+				+0.1
3,729,567	+				+0.1
3,729,568	-				-0.9
3,729,568	-				-1.3
3,729,568	-				-0.6
3,729,568	-				-1.9
3,729,595	+		Sama_3142	0.11	-1.4
3,729,596	-		Sama_3142	0.11	-1.3
3,729,596	-		Sama_3142	0.11	+1.1
3,729,596	-		Sama_3142	0.11	-0.4
3,729,596	-		Sama_3142	0.11	-2.6
3,729,596	-		Sama_3142	0.11	+1.4
3,729,645	+		Sama_3142	0.15	+1.3
3,729,645	+		Sama_3142	0.15	-0.9
3,729,645	+		Sama_3142	0.15	-1.6
3,729,645	+		Sama_3142	0.15	-0.7
3,729,645	+		Sama_3142	0.15	-0.7
3,729,646	-		Sama_3142	0.15	-0.8
3,729,646	-		Sama_3142	0.15	-0.2
3,729,646	-		Sama_3142	0.15	-1.5
3,729,646	-		Sama_3142	0.15	-0.2
3,729,646	-		Sama_3142	0.15	-0.7
3,729,646	-		Sama_3142	0.15	-1.2
3,729,720	+		Sama_3142	0.21	-0.5
3,729,721	-		Sama_3142	0.22	+0.1
3,729,721	-		Sama_3142	0.22	+0.3
3,729,735	+		Sama_3142	0.23	-3.0
3,729,735	+		Sama_3142	0.23	-0.9
3,729,735	+		Sama_3142	0.23	+1.7
3,729,750	+		Sama_3142	0.24	+0.2
3,729,750	+		Sama_3142	0.24	-0.7
3,729,750	+		Sama_3142	0.24	-0.1
3,729,750	+		Sama_3142	0.24	+0.6
3,729,751	-		Sama_3142	0.24	+0.7
3,729,867	+		Sama_3142	0.34	-0.7
3,729,873	+		Sama_3142	0.34	-1.9
3,729,873	+		Sama_3142	0.34	+0.4
3,729,874	-		Sama_3142	0.34	-0.6
3,729,874	-		Sama_3142	0.34	-1.4
3,729,895	+		Sama_3142	0.36	-2.3
3,729,915	+		Sama_3142	0.38	-1.2
3,729,915	+		Sama_3142	0.38	+0.1
3,729,915	+		Sama_3142	0.38	-1.3
3,729,916	-		Sama_3142	0.38	+0.7
3,729,916	-		Sama_3142	0.38	-1.3
3,729,916	-		Sama_3142	0.38	-0.5
3,729,916	-		Sama_3142	0.38	+0.2
3,730,033	-		Sama_3142	0.48	-0.2
3,730,067	+		Sama_3142	0.51	-0.6
3,730,067	+		Sama_3142	0.51	-1.9
3,730,067	+		Sama_3142	0.51	-1.2
3,730,067	+		Sama_3142	0.51	+0.1
3,730,067	+		Sama_3142	0.51	+0.2
3,730,067	+		Sama_3142	0.51	+1.8
3,730,067	+		Sama_3142	0.51	-2.0
3,730,068	-		Sama_3142	0.51	-0.2
3,730,068	-		Sama_3142	0.51	-0.6
3,730,068	-		Sama_3142	0.51	-0.5
3,730,068	-		Sama_3142	0.51	-2.1
3,730,068	-		Sama_3142	0.51	-0.4
3,730,068	-		Sama_3142	0.51	-0.2
3,730,068	-		Sama_3142	0.51	+0.2
3,730,068	-		Sama_3142	0.51	-0.2
3,730,098	+		Sama_3142	0.53	-1.5
3,730,099	-		Sama_3142	0.53	-1.4
3,730,188	+		Sama_3142	0.61	-2.3
3,730,188	+		Sama_3142	0.61	-0.6
3,730,189	-		Sama_3142	0.61	-2.2
3,730,189	-		Sama_3142	0.61	-0.2
3,730,236	+		Sama_3142	0.65	-2.2
3,730,315	-		Sama_3142	0.71	-1.1
3,730,315	-		Sama_3142	0.71	+0.1
3,730,440	-		Sama_3142	0.82	-1.0
3,730,449	+		Sama_3142	0.82	-0.2
3,730,449	+		Sama_3142	0.82	-0.2
3,730,449	+		Sama_3142	0.82	-1.6
3,730,450	-		Sama_3142	0.83	-0.5
3,730,450	-		Sama_3142	0.83	-0.4