Strain Fitness in Shewanella amazonensis SB2B around Sama_3037

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,613,956	+		Sama_3036	0.71	-1.2
3,614,044	+		Sama_3036	0.74	-0.1
3,614,054	-		Sama_3036	0.74	+0.4
3,614,083	+		Sama_3036	0.75	-0.4
3,614,113	+		Sama_3036	0.76	+1.3
3,614,113	+		Sama_3036	0.76	-0.4
3,614,113	+		Sama_3036	0.76	-0.5
3,614,113	+		Sama_3036	0.76	+2.1
3,614,113	+		Sama_3036	0.76	+2.4
3,614,113	+		Sama_3036	0.76	+0.5
3,614,113	+		Sama_3036	0.76	-0.7
3,614,113	+		Sama_3036	0.76	-0.1
3,614,113	+		Sama_3036	0.76	-0.5
3,614,114	-		Sama_3036	0.76	-0.9
3,614,114	-		Sama_3036	0.76	-1.7
3,614,114	-		Sama_3036	0.76	-0.7
3,614,114	-		Sama_3036	0.76	+1.8
3,614,114	-		Sama_3036	0.76	-1.7
3,614,114	-		Sama_3036	0.76	-0.3
3,614,114	-		Sama_3036	0.76	+1.4
3,614,137	-		Sama_3036	0.77	-0.1
3,614,137	-		Sama_3036	0.77	-1.4
3,614,190	+		Sama_3036	0.78	-2.8
3,614,191	-		Sama_3036	0.78	-0.7
3,614,191	-		Sama_3036	0.78	-1.3
3,614,215	+		Sama_3036	0.79	-0.4
3,614,216	-		Sama_3036	0.79	-0.9
3,614,295	+		Sama_3036	0.82	+1.2
3,614,295	+		Sama_3036	0.82	-0.6
3,614,295	+		Sama_3036	0.82	-0.0
3,614,295	+		Sama_3036	0.82	+4.2
3,614,296	-		Sama_3036	0.82	-0.2
3,614,363	-		Sama_3036	0.84	+0.1
3,614,379	+		Sama_3036	0.84	+2.9
3,614,379	+		Sama_3036	0.84	+0.7
3,614,380	-		Sama_3036	0.84	+0.3
3,614,380	-		Sama_3036	0.84	+0.1
3,614,380	-		Sama_3036	0.84	+0.1
3,614,401	+		Sama_3036	0.85	-1.0
3,614,475	+		Sama_3036	0.87	+1.0
3,614,475	+		Sama_3036	0.87	-0.3
3,614,475	+		Sama_3036	0.87	+0.5
3,614,475	+		Sama_3036	0.87	-1.4
3,614,475	+		Sama_3036	0.87	+0.6
3,614,475	+		Sama_3036	0.87	+1.9
3,614,475	+		Sama_3036	0.87	+0.4
3,614,475	+		Sama_3036	0.87	-0.0
3,614,475	+		Sama_3036	0.87	-1.8
3,614,475	+		Sama_3036	0.87	+0.5
3,614,475	+		Sama_3036	0.87	+0.2
3,614,475	+		Sama_3036	0.87	-0.5
3,614,475	+		Sama_3036	0.87	+1.9
3,614,476	-		Sama_3036	0.87	-0.1
3,614,476	-		Sama_3036	0.87	+0.1
3,614,476	-		Sama_3036	0.87	-0.6
3,614,476	-		Sama_3036	0.87	-0.3
3,614,476	-		Sama_3036	0.87	-0.0
3,614,476	-		Sama_3036	0.87	-1.1
3,614,476	-		Sama_3036	0.87	-1.9
3,614,476	-		Sama_3036	0.87	-0.4
3,614,476	-		Sama_3036	0.87	+0.3
3,614,476	-		Sama_3036	0.87	-1.5
3,614,476	-		Sama_3036	0.87	+0.6
3,614,476	-		Sama_3036	0.87	-0.5
3,614,476	-		Sama_3036	0.87	-0.4
3,614,476	-		Sama_3036	0.87	-0.8
3,614,497	+		Sama_3036	0.88	-0.9
3,614,497	+		Sama_3036	0.88	-2.3
3,614,509	+		Sama_3036	0.88	+0.9
3,614,714	+				+3.1
3,614,714	+				-0.9
3,614,721	+				-0.9
3,614,721	+				-1.2
3,614,721	+				-0.4
3,614,721	+				-1.3
3,614,721	+				-0.0
3,614,722	-				+0.4
3,614,722	-				+0.1
3,614,722	-				-0.8
3,614,722	-				+0.8
3,614,729	+				+0.1
3,614,729	+				+0.4
3,614,729	+				+1.8
3,614,730	-				-1.4
3,614,730	-				-1.0
3,614,730	-				+1.2
3,614,730	-				+1.9
3,614,782	+				+0.7
3,614,783	-				-0.0
3,614,783	-				+2.0
3,614,783	-				-1.0
3,614,783	-				+1.6
3,614,783	-				-1.9
3,614,783	-				+0.1
3,614,788	+				-0.6
3,614,822	+				+0.4
3,614,941	+				-0.9
3,615,018	+		Sama_3037	0.15	-0.7
3,615,019	-		Sama_3037	0.15	-0.5
3,615,035	+		Sama_3037	0.18	-0.8
3,615,035	+		Sama_3037	0.18	-0.1
3,615,035	+		Sama_3037	0.18	-0.3
3,615,035	+		Sama_3037	0.18	+0.1
3,615,035	+		Sama_3037	0.18	+0.6
3,615,036	-		Sama_3037	0.18	-0.5
3,615,041	+		Sama_3037	0.18	+1.0
3,615,041	+		Sama_3037	0.18	-1.8
3,615,041	+		Sama_3037	0.18	-0.9
3,615,042	-		Sama_3037	0.19	+0.3
3,615,188	+		Sama_3037	0.39	-1.2
3,615,189	-		Sama_3037	0.39	-0.9
3,615,189	-		Sama_3037	0.39	+3.2
3,615,189	-		Sama_3037	0.39	+1.8
3,615,241	+		Sama_3037	0.46	-1.6
3,615,242	-		Sama_3037	0.46	-0.1
3,615,242	-		Sama_3037	0.46	-0.9
3,615,268	+		Sama_3037	0.50	-0.4
3,615,268	+		Sama_3037	0.50	+0.1
3,615,439	-		Sama_3037	0.73	+0.6
3,615,487	+		Sama_3037	0.80	+2.6
3,615,488	-		Sama_3037	0.80	-1.3
3,615,488	-		Sama_3037	0.80	+0.3
3,615,488	-		Sama_3037	0.80	-0.4
3,615,488	-		Sama_3037	0.80	+0.0
3,615,493	+		Sama_3037	0.81	+0.2
3,615,493	+		Sama_3037	0.81	+2.4
3,615,493	+		Sama_3037	0.81	+0.1
3,615,494	-		Sama_3037	0.81	-0.1
3,615,494	-		Sama_3037	0.81	+0.2
3,615,494	-		Sama_3037	0.81	-1.6
3,615,494	-		Sama_3037	0.81	+0.1
3,615,494	-		Sama_3037	0.81	+1.7
3,615,517	-		Sama_3037	0.84	+0.2
3,615,551	+		Sama_3037	0.89	+1.4
3,615,563	-				-0.9
3,615,634	+				+0.3
3,615,634	+				+0.0
3,615,634	+				-0.8
3,615,634	+				-1.5
3,615,635	-				+0.5
3,615,662	+				-1.4
3,615,662	+				+0.9
3,615,697	-		Sama_3038	0.11	+0.2
3,615,703	-		Sama_3038	0.13	+1.7
3,615,709	+		Sama_3038	0.14	+0.2
3,615,709	+		Sama_3038	0.14	+0.4
3,615,709	+		Sama_3038	0.14	-0.1
3,615,709	+		Sama_3038	0.14	+1.0
3,615,710	-		Sama_3038	0.15	-0.8
3,615,710	-		Sama_3038	0.15	+2.9
3,615,710	-		Sama_3038	0.15	-1.6
3,615,710	-		Sama_3038	0.15	-0.8
3,615,790	+		Sama_3038	0.39	-0.2
3,615,791	-		Sama_3038	0.39	+1.6
3,615,791	-		Sama_3038	0.39	+0.1
3,615,791	-		Sama_3038	0.39	-0.2
3,615,791	-		Sama_3038	0.39	+3.0
3,615,813	+		Sama_3038	0.46	+1.0
3,615,814	-		Sama_3038	0.46	-0.5
3,615,819	+		Sama_3038	0.47	-0.5
3,615,819	-		Sama_3038	0.47	+2.2
3,615,820	-		Sama_3038	0.48	+0.2
3,615,929	-		Sama_3038	0.80	-0.2
3,615,966	+				-2.0
3,615,966	+				+2.2
3,615,966	+				+2.5
3,615,966	+				+0.1
3,615,967	-				+0.4
3,615,967	-				-1.1
3,615,967	-				+0.6
3,615,967	-				-0.4
3,615,969	+				-2.6
3,615,969	+				+1.6
3,615,970	-				-1.3
3,615,971	-				+2.5
3,615,976	+				+0.7
3,615,977	-				+1.0
3,615,993	+				+0.3
3,615,999	+				-0.5
3,616,004	+				-0.2
3,616,004	+				-0.6
3,616,005	-				-2.0
3,616,005	-				+3.4
3,616,008	+				-0.6
3,616,008	+				+2.0
3,616,008	+				-0.9
3,616,022	-				-1.2
3,616,022	-				+0.3
3,616,025	+				+0.6
3,616,025	+				+0.4
3,616,025	+				+1.0
3,616,033	+				+0.5
3,616,034	-				-0.5
3,616,044	+				+0.8
3,616,044	+				-0.3
3,616,044	+				-0.7
3,616,044	+				+0.3
3,616,044	+				+2.1
3,616,044	+				+0.1
3,616,044	+				-1.2
3,616,044	+				-0.5
3,616,045	-				-0.4
3,616,045	-				-0.5
3,616,045	-				+0.4
3,616,045	-				-0.4
3,616,045	-				-0.5
3,616,045	-				+0.2
3,616,045	-				+1.7
3,616,045	-				+0.4
3,616,045	-				-0.6
3,616,045	-				+0.0
3,616,045	-				-1.2
3,616,045	-				+1.1
3,616,045	-				+0.2
3,616,062	-				+0.5
3,616,208	+		Sama_3039	0.17	-1.5
3,616,208	+		Sama_3039	0.17	-0.3
3,616,208	+		Sama_3039	0.17	-0.0
3,616,209	-		Sama_3039	0.17	+0.9
3,616,291	+		Sama_3039	0.26	-0.5
3,616,291	+		Sama_3039	0.26	+0.3
3,616,292	-		Sama_3039	0.26	+1.8
3,616,339	+		Sama_3039	0.31	-0.1
3,616,340	-		Sama_3039	0.31	+0.7
3,616,340	-		Sama_3039	0.31	-0.2
3,616,340	-		Sama_3039	0.31	+0.4
3,616,340	-		Sama_3039	0.31	-1.2
3,616,340	-		Sama_3039	0.31	-0.0
3,616,340	-		Sama_3039	0.31	-0.1
3,616,384	+		Sama_3039	0.36	+0.6
3,616,384	+		Sama_3039	0.36	-0.2
3,616,384	+		Sama_3039	0.36	+0.4
3,616,384	+		Sama_3039	0.36	-0.1
3,616,384	+		Sama_3039	0.36	+0.5
3,616,384	+		Sama_3039	0.36	+0.4
3,616,384	+		Sama_3039	0.36	-0.2
3,616,385	-		Sama_3039	0.36	+0.2
3,616,385	-		Sama_3039	0.36	-0.2
3,616,385	-		Sama_3039	0.36	-0.2
3,616,385	-		Sama_3039	0.36	-0.1
3,616,385	-		Sama_3039	0.36	-0.4
3,616,385	-		Sama_3039	0.36	-0.6
3,616,385	-		Sama_3039	0.36	-0.9
3,616,385	-		Sama_3039	0.36	+0.3
3,616,385	-		Sama_3039	0.36	+0.0
3,616,385	-		Sama_3039	0.36	+0.6
3,616,386	+		Sama_3039	0.36	-0.7
3,616,386	+		Sama_3039	0.36	-1.0
3,616,386	+		Sama_3039	0.36	-0.2
3,616,386	+		Sama_3039	0.36	+1.4
3,616,387	-		Sama_3039	0.37	+0.2
3,616,387	-		Sama_3039	0.37	+1.4
3,616,387	-		Sama_3039	0.37	-1.6
3,616,387	-		Sama_3039	0.37	-0.5
3,616,426	+		Sama_3039	0.41	-0.9
3,616,426	+		Sama_3039	0.41	+0.2
3,616,426	+		Sama_3039	0.41	-0.0
3,616,426	+		Sama_3039	0.41	-0.4
3,616,426	+		Sama_3039	0.41	-1.0
3,616,427	-		Sama_3039	0.41	+0.3
3,616,427	-		Sama_3039	0.41	+0.5
3,616,427	-		Sama_3039	0.41	+2.9
3,616,427	-		Sama_3039	0.41	+1.2
3,616,465	-		Sama_3039	0.45	+1.0