Strain Fitness in Shewanella amazonensis SB2B around Sama_2809

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,347,257	+				-3.0
3,347,257	+				-1.0
3,347,257	+				-0.4
3,347,257	+				-1.4
3,347,257	+				+2.8
3,347,257	+				-0.6
3,347,257	+				-0.2
3,347,257	+				+0.6
3,347,257	+				-0.4
3,347,258	-				+0.1
3,347,258	-				-0.7
3,347,258	-				+1.1
3,347,258	-				-0.3
3,347,258	-				+0.5
3,347,297	+				-1.0
3,347,297	+				-1.5
3,347,298	-				+0.2
3,347,298	-				-0.6
3,347,298	-				-3.2
3,347,312	+				+0.5
3,347,313	-				-0.4
3,347,313	-				-0.9
3,347,313	-				-1.0
3,347,313	-				-0.1
3,347,313	-				-1.1
3,347,316	+				-1.1
3,347,316	+				-0.5
3,347,317	-				-0.8
3,347,317	-				-1.0
3,347,317	-				+1.0
3,347,317	-				+0.0
3,347,317	-				-0.5
3,347,317	-				-1.1
3,347,329	-				+0.5
3,347,329	-				-0.3
3,347,329	-				+0.5
3,347,332	+				-0.0
3,347,332	+				-1.6
3,347,332	+				+1.9
3,347,332	+				+0.1
3,347,333	-				+3.4
3,347,333	-				-0.2
3,347,333	-				+0.6
3,347,333	-				-2.1
3,347,333	-				+0.5
3,347,345	-				+0.7
3,347,361	-				-0.4
3,347,416	+				+0.1
3,347,417	-				+0.7
3,347,417	-				+0.5
3,347,417	-				-0.9
3,347,417	-				-0.5
3,347,434	+				-2.4
3,347,435	-				+0.1
3,347,435	-				+0.8
3,347,486	+				-0.9
3,347,486	+				-1.1
3,347,486	+				-1.7
3,347,487	-				+0.4
3,347,487	-				+2.4
3,347,487	-				-0.3
3,347,487	-				-0.2
3,347,521	-				-1.0
3,347,533	+				+0.3
3,347,533	+				-0.1
3,347,533	+				+0.6
3,347,534	-				-0.2
3,347,534	-				-1.3
3,347,534	-				-1.8
3,347,534	-				+0.5
3,347,534	-				+0.7
3,347,547	+				-0.7
3,347,548	-				+0.3
3,347,556	+				-0.8
3,347,557	-				+0.3
3,347,557	-				+0.8
3,347,557	-				-0.1
3,347,557	-				+0.9
3,347,557	-				-0.2
3,347,557	-				-0.1
3,347,594	+				+0.0
3,347,595	-				-0.9
3,347,636	+				-2.1
3,347,640	+				+2.8
3,347,640	+				+0.4
3,347,640	+				+0.1
3,347,640	+				-1.0
3,347,640	+				-0.6
3,347,641	-				-0.2
3,347,641	-				+0.3
3,347,641	-				+2.9
3,347,701	+				-0.2
3,347,701	+				+0.7
3,347,701	+				-0.7
3,347,701	+				-0.9
3,347,701	+				-0.4
3,347,701	+				-0.2
3,347,701	+				-0.7
3,347,701	+				-0.5
3,347,701	+				+0.2
3,347,702	-		Sama_2808	0.10	+0.1
3,347,702	-		Sama_2808	0.10	-0.1
3,347,702	-		Sama_2808	0.10	+0.8
3,347,702	-		Sama_2808	0.10	+0.4
3,347,702	-		Sama_2808	0.10	+1.6
3,347,702	-		Sama_2808	0.10	+0.1
3,347,702	-		Sama_2808	0.10	+0.3
3,347,702	-		Sama_2808	0.10	-0.7
3,347,702	-		Sama_2808	0.10	+2.8
3,347,746	-		Sama_2808	0.17	+0.1
3,347,802	+		Sama_2808	0.27	-0.8
3,347,838	+		Sama_2808	0.33	-0.3
3,347,838	+		Sama_2808	0.33	-0.0
3,347,838	+		Sama_2808	0.33	+0.2
3,347,838	+		Sama_2808	0.33	+0.2
3,347,838	+		Sama_2808	0.33	-0.8
3,347,839	-		Sama_2808	0.33	-0.6
3,347,928	+		Sama_2808	0.47	+0.1
3,347,928	+		Sama_2808	0.47	-1.3
3,347,929	-		Sama_2808	0.48	+0.3
3,347,979	-		Sama_2808	0.56	-0.1
3,348,025	+		Sama_2808	0.63	+0.4
3,348,046	-		Sama_2808	0.67	-0.2
3,348,054	-		Sama_2808	0.68	+1.5
3,348,054	-		Sama_2808	0.68	-0.3
3,348,054	-		Sama_2808	0.68	+0.1
3,348,111	-		Sama_2808	0.78	-1.2
3,348,187	+				-0.5
3,348,189	+				+1.0
3,348,190	-				+1.2
3,348,190	-				+1.0
3,348,190	-				+0.1
3,348,223	+				+0.2
3,348,223	+				-1.6
3,348,223	+				-0.3
3,348,223	+				-1.1
3,348,223	+				+2.5
3,348,223	+				+2.5
3,348,223	+				-0.2
3,348,223	+				+0.1
3,348,223	+				+0.1
3,348,223	+				-1.8
3,348,223	+				+1.4
3,348,224	-				+0.4
3,348,224	-				-0.3
3,348,224	-				-0.7
3,348,224	-				-1.7
3,348,224	-				+0.2
3,348,224	-				-1.0
3,348,224	-				-0.1
3,348,288	+				-0.5
3,348,288	+				+1.7
3,348,289	-				-0.2
3,348,289	-				-0.6
3,348,292	+				+1.8
3,348,292	+				+0.6
3,348,292	+				+0.5
3,348,292	+				-0.1
3,348,292	+				+2.4
3,348,293	-				+0.2
3,348,293	-				+0.5
3,348,293	-				-0.0
3,348,293	-				-0.4
3,348,293	-				+0.1
3,348,293	-				-1.2
3,348,293	-				+1.9
3,348,293	-				+0.3
3,348,293	-				-1.0
3,348,293	-				-2.4
3,348,368	+		Sama_2809	0.22	+0.6
3,348,368	+		Sama_2809	0.22	-1.8
3,348,380	+		Sama_2809	0.24	-0.6
3,348,380	+		Sama_2809	0.24	-0.2
3,348,380	+		Sama_2809	0.24	+2.5
3,348,380	+		Sama_2809	0.24	+1.0
3,348,380	+		Sama_2809	0.24	+0.0
3,348,380	+		Sama_2809	0.24	+1.3
3,348,381	-		Sama_2809	0.25	+0.4
3,348,381	-		Sama_2809	0.25	-1.1
3,348,381	-		Sama_2809	0.25	-2.5
3,348,466	+		Sama_2809	0.41	-1.6
3,348,467	-		Sama_2809	0.41	+0.9
3,348,472	+		Sama_2809	0.42	+2.9
3,348,500	-		Sama_2809	0.48	-0.5
3,348,557	+		Sama_2809	0.59	-2.8
3,348,557	+		Sama_2809	0.59	+1.2
3,348,558	-		Sama_2809	0.59	+1.1
3,348,615	-		Sama_2809	0.70	+2.4
3,348,615	-		Sama_2809	0.70	+1.1
3,348,625	+		Sama_2809	0.72	+0.6
3,348,662	-		Sama_2809	0.79	-0.3
3,348,662	-		Sama_2809	0.79	+0.0
3,348,703	+		Sama_2809	0.87	-0.3
3,348,747	-				-0.1
3,348,790	-				+0.1
3,348,810	-				+0.7
3,348,845	+				+0.3
3,348,896	+		Sama_2810	0.15	-0.4
3,348,896	+		Sama_2810	0.15	+1.3
3,348,896	+		Sama_2810	0.15	-0.1
3,348,896	+		Sama_2810	0.15	-0.9
3,348,896	+		Sama_2810	0.15	-0.4
3,348,896	+		Sama_2810	0.15	-1.3
3,348,897	-		Sama_2810	0.15	-1.0
3,348,897	-		Sama_2810	0.15	-0.8
3,348,897	-		Sama_2810	0.15	-0.5
3,348,897	-		Sama_2810	0.15	+1.6
3,348,897	-		Sama_2810	0.15	+0.9
3,348,897	-		Sama_2810	0.15	+0.5
3,348,966	+		Sama_2810	0.23	-0.3
3,348,967	-		Sama_2810	0.23	-0.2
3,348,984	+		Sama_2810	0.25	+0.0
3,349,010	-		Sama_2810	0.29	-2.5
3,349,040	-		Sama_2810	0.32	+0.1
3,349,040	-		Sama_2810	0.32	+0.9
3,349,040	-		Sama_2810	0.32	-0.5
3,349,063	+		Sama_2810	0.35	-0.4
3,349,063	+		Sama_2810	0.35	-0.7
3,349,064	-		Sama_2810	0.35	-0.1
3,349,207	+		Sama_2810	0.53	+1.3
3,349,208	-		Sama_2810	0.53	+0.3
3,349,228	+		Sama_2810	0.55	+1.2
3,349,228	+		Sama_2810	0.55	+1.2
3,349,228	+		Sama_2810	0.55	+0.2
3,349,228	+		Sama_2810	0.55	+0.3
3,349,228	+		Sama_2810	0.55	+0.2
3,349,228	+		Sama_2810	0.55	-0.5
3,349,228	+		Sama_2810	0.55	+2.5
3,349,229	-		Sama_2810	0.55	-0.5
3,349,229	-		Sama_2810	0.55	+0.2
3,349,229	-		Sama_2810	0.55	-0.2
3,349,229	-		Sama_2810	0.55	-0.5
3,349,229	-		Sama_2810	0.55	+0.5
3,349,242	+		Sama_2810	0.57	-1.4
3,349,242	+		Sama_2810	0.57	-2.8
3,349,242	+		Sama_2810	0.57	+0.2
3,349,242	+		Sama_2810	0.57	-0.4
3,349,242	+		Sama_2810	0.57	+0.5
3,349,528	-				+0.8
3,349,565	+				+0.3
3,349,565	+				+2.1
3,349,588	+				+2.3
3,349,589	-				-0.5
3,349,589	-				-1.1
3,349,606	+				+2.7
3,349,677	+				-0.0
3,349,678	-				-0.8
3,349,719	+		Sama_2811	0.11	+0.1
3,349,719	+		Sama_2811	0.11	-1.5
3,349,719	+		Sama_2811	0.11	+0.2
3,349,737	+		Sama_2811	0.12	-0.9
3,349,761	+		Sama_2811	0.15	-0.6
3,349,762	-		Sama_2811	0.15	+0.0
3,349,762	-		Sama_2811	0.15	+0.1