Strain Fitness in Shewanella amazonensis SB2B around Sama_2627

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,144,512	-		Sama_2625	0.56	+0.7
3,144,512	-		Sama_2625	0.56	+1.3
3,144,522	+		Sama_2625	0.57	+1.7
3,144,522	+		Sama_2625	0.57	-0.2
3,144,522	+		Sama_2625	0.57	-1.0
3,144,522	+		Sama_2625	0.57	-0.4
3,144,552	+		Sama_2625	0.59	+0.8
3,144,552	+		Sama_2625	0.59	+0.3
3,144,552	+		Sama_2625	0.59	-0.6
3,144,552	+		Sama_2625	0.59	+2.9
3,144,552	+		Sama_2625	0.59	-0.8
3,144,552	+		Sama_2625	0.59	+0.5
3,144,553	-		Sama_2625	0.59	+1.6
3,144,553	-		Sama_2625	0.59	+1.1
3,144,553	-		Sama_2625	0.59	-0.1
3,144,560	+		Sama_2625	0.60	+1.5
3,144,609	-		Sama_2625	0.64	+0.9
3,144,618	+		Sama_2625	0.65	-0.2
3,144,619	-		Sama_2625	0.65	-0.6
3,144,619	-		Sama_2625	0.65	+0.7
3,144,619	-		Sama_2625	0.65	-2.1
3,144,713	-		Sama_2625	0.73	+1.2
3,144,713	-		Sama_2625	0.73	+0.7
3,144,726	-		Sama_2625	0.74	+0.3
3,144,797	+		Sama_2625	0.80	-0.0
3,144,798	-		Sama_2625	0.81	+1.1
3,144,798	-		Sama_2625	0.81	+0.1
3,144,854	+		Sama_2625	0.85	+2.8
3,144,854	+		Sama_2625	0.85	-0.1
3,144,855	-		Sama_2625	0.85	-1.0
3,144,859	+		Sama_2625	0.86	-0.3
3,144,859	+		Sama_2625	0.86	-0.5
3,144,860	-		Sama_2625	0.86	+1.2
3,144,860	-		Sama_2625	0.86	-0.7
3,144,888	-		Sama_2625	0.88	+0.3
3,144,888	-		Sama_2625	0.88	+0.3
3,144,888	-		Sama_2625	0.88	-1.5
3,144,888	-		Sama_2625	0.88	+0.1
3,145,005	-				+1.3
3,145,021	-				+2.5
3,145,021	-				-1.2
3,145,021	-				+0.3
3,145,021	-				+0.5
3,145,021	-				-0.1
3,145,027	+				+1.6
3,145,027	+				+0.6
3,145,028	-				+0.3
3,145,028	-				-0.2
3,145,070	+		Sama_2626	0.24	-1.9
3,145,070	+		Sama_2626	0.24	-0.2
3,145,070	+		Sama_2626	0.24	-0.8
3,145,071	-		Sama_2626	0.25	+0.9
3,145,208	+				-0.3
3,145,208	+				-0.8
3,145,208	+				+0.7
3,145,209	-				-1.5
3,145,216	-				-0.2
3,145,241	+				+0.1
3,145,241	+				-1.0
3,145,242	-				-1.0
3,145,259	+				+0.3
3,145,259	+				-2.8
3,145,260	-				-3.2
3,145,260	-				-1.5
3,145,281	+				-1.8
3,145,281	+				-0.3
3,145,282	-				-1.3
3,145,282	-				-0.5
3,145,282	-				-2.1
3,145,289	+				-2.4
3,145,289	+				-1.5
3,145,290	-				-1.7
3,145,290	-				-0.5
3,145,290	-				-1.3
3,145,290	-				-1.4
3,145,290	-				-1.3
3,145,290	-				+0.5
3,145,290	-				-1.9
3,145,290	-				-2.7
3,145,290	-				-0.1
3,145,290	-				-0.5
3,145,291	+				-0.7
3,145,291	+				-0.7
3,145,292	-				-1.0
3,145,292	-				+0.3
3,145,292	-				-0.7
3,145,310	+				-0.5
3,145,360	+				-1.6
3,145,361	-				-2.6
3,145,361	-				-2.2
3,145,376	+				-2.5
3,145,376	+				-3.2
3,145,377	-				-1.8
3,145,441	+				-3.0
3,145,441	+				-2.6
3,145,512	+				-1.6
3,145,513	-				-2.3
3,145,540	-				-3.4
3,145,600	+		Sama_2627	0.13	-2.8
3,145,601	-		Sama_2627	0.13	-3.7
3,145,601	-		Sama_2627	0.13	-2.0
3,145,631	+		Sama_2627	0.14	-0.5
3,145,631	+		Sama_2627	0.14	-2.3
3,145,631	+		Sama_2627	0.14	-2.1
3,145,632	-		Sama_2627	0.14	-3.0
3,145,632	-		Sama_2627	0.14	-2.2
3,145,632	-		Sama_2627	0.14	-4.7
3,145,632	-		Sama_2627	0.14	-3.2
3,145,632	-		Sama_2627	0.14	-3.1
3,145,632	-		Sama_2627	0.14	-4.5
3,145,632	-		Sama_2627	0.14	-3.8
3,145,632	-		Sama_2627	0.14	-4.6
3,145,632	-		Sama_2627	0.14	-2.8
3,145,632	-		Sama_2627	0.14	-3.0
3,145,632	-		Sama_2627	0.14	-1.4
3,145,642	+		Sama_2627	0.14	-3.2
3,145,643	-		Sama_2627	0.14	-1.2
3,145,643	-		Sama_2627	0.14	-3.6
3,145,652	-		Sama_2627	0.15	-3.0
3,145,652	-		Sama_2627	0.15	-1.8
3,145,653	+		Sama_2627	0.15	-1.1
3,145,653	+		Sama_2627	0.15	-3.0
3,145,653	+		Sama_2627	0.15	+0.1
3,145,653	+		Sama_2627	0.15	-3.5
3,145,653	+		Sama_2627	0.15	-1.6
3,145,653	+		Sama_2627	0.15	-3.9
3,145,734	+		Sama_2627	0.18	-2.8
3,145,734	+		Sama_2627	0.18	-1.6
3,145,735	-		Sama_2627	0.18	-5.0
3,145,799	-		Sama_2627	0.21	-2.4
3,145,807	+		Sama_2627	0.22	-3.4
3,145,812	-		Sama_2627	0.22	-3.2
3,145,812	-		Sama_2627	0.22	-2.4
3,145,842	-		Sama_2627	0.23	-4.0
3,145,862	-		Sama_2627	0.24	-2.9
3,145,882	+		Sama_2627	0.25	-2.3
3,145,882	+		Sama_2627	0.25	-2.4
3,145,883	-		Sama_2627	0.25	-2.7
3,145,968	+		Sama_2627	0.29	-2.4
3,145,968	+		Sama_2627	0.29	-4.1
3,145,990	+		Sama_2627	0.30	-2.1
3,145,991	-		Sama_2627	0.30	-0.5
3,145,991	-		Sama_2627	0.30	-0.5
3,146,016	+		Sama_2627	0.31	-1.9
3,146,049	+		Sama_2627	0.32	-1.3
3,146,049	+		Sama_2627	0.32	-2.3
3,146,106	+		Sama_2627	0.35	-3.8
3,146,106	+		Sama_2627	0.35	-1.4
3,146,106	+		Sama_2627	0.35	-2.3
3,146,107	-		Sama_2627	0.35	-3.9
3,146,107	-		Sama_2627	0.35	-1.8
3,146,116	+		Sama_2627	0.35	-2.0
3,146,116	+		Sama_2627	0.35	-0.7
3,146,122	+		Sama_2627	0.35	-0.7
3,146,141	+		Sama_2627	0.36	-1.5
3,146,182	+		Sama_2627	0.38	-4.4
3,146,183	-		Sama_2627	0.38	-2.3
3,146,214	+		Sama_2627	0.40	-4.1
3,146,291	+		Sama_2627	0.43	-3.6
3,146,292	-		Sama_2627	0.43	-2.7
3,146,292	-		Sama_2627	0.43	-2.4
3,146,292	-		Sama_2627	0.43	-3.8
3,146,296	+		Sama_2627	0.43	-2.8
3,146,296	+		Sama_2627	0.43	-3.1
3,146,297	-		Sama_2627	0.43	-2.6
3,146,320	+		Sama_2627	0.44	-3.1
3,146,320	+		Sama_2627	0.44	-3.0
3,146,320	+		Sama_2627	0.44	-1.3
3,146,320	+		Sama_2627	0.44	-2.7
3,146,320	+		Sama_2627	0.44	-1.1
3,146,320	+		Sama_2627	0.44	-1.5
3,146,321	-		Sama_2627	0.44	-2.6
3,146,321	-		Sama_2627	0.44	-2.2
3,146,321	-		Sama_2627	0.44	-1.6
3,146,321	-		Sama_2627	0.44	-2.2
3,146,321	-		Sama_2627	0.44	-2.8
3,146,499	-		Sama_2627	0.52	-1.7
3,146,507	-		Sama_2627	0.52	-2.7
3,146,507	-		Sama_2627	0.52	-2.6
3,146,572	+		Sama_2627	0.55	-2.0
3,146,573	-		Sama_2627	0.55	-1.9
3,146,573	-		Sama_2627	0.55	-1.7
3,146,573	-		Sama_2627	0.55	-2.2
3,146,573	-		Sama_2627	0.55	-3.1
3,146,573	-		Sama_2627	0.55	-2.2
3,146,738	+		Sama_2627	0.63	-1.6
3,146,738	+		Sama_2627	0.63	-3.1
3,146,738	+		Sama_2627	0.63	-1.2
3,146,739	-		Sama_2627	0.63	-3.2
3,146,834	-		Sama_2627	0.67	-3.3
3,146,862	+		Sama_2627	0.68	-2.7
3,146,865	+		Sama_2627	0.68	-0.8
3,146,865	+		Sama_2627	0.68	-2.6
3,146,866	-		Sama_2627	0.68	-1.2
3,146,866	-		Sama_2627	0.68	-2.1
3,146,866	-		Sama_2627	0.68	-1.2
3,146,866	-		Sama_2627	0.68	-2.3
3,146,884	+		Sama_2627	0.69	-4.0
3,146,899	+		Sama_2627	0.70	-1.4
3,146,900	-		Sama_2627	0.70	-3.1
3,146,910	+		Sama_2627	0.70	-2.4
3,146,978	+		Sama_2627	0.73	-2.2
3,146,979	-		Sama_2627	0.73	-3.0
3,147,024	+		Sama_2627	0.75	-4.6
3,147,024	+		Sama_2627	0.75	-1.4
3,147,024	+		Sama_2627	0.75	-1.8
3,147,024	+		Sama_2627	0.75	-2.4
3,147,024	+		Sama_2627	0.75	-2.9
3,147,024	+		Sama_2627	0.75	-2.9
3,147,024	+		Sama_2627	0.75	-2.9
3,147,024	+		Sama_2627	0.75	-3.9
3,147,024	+		Sama_2627	0.75	-1.6
3,147,024	+		Sama_2627	0.75	-3.2
3,147,025	-		Sama_2627	0.75	-1.5
3,147,025	-		Sama_2627	0.75	-2.2
3,147,025	-		Sama_2627	0.75	-3.3
3,147,025	-		Sama_2627	0.75	-2.6
3,147,025	-		Sama_2627	0.75	-3.1
3,147,025	-		Sama_2627	0.75	-1.8
3,147,025	-		Sama_2627	0.75	-3.9
3,147,025	-		Sama_2627	0.75	-1.3
3,147,025	-		Sama_2627	0.75	-3.1
3,147,028	+		Sama_2627	0.75	-3.1
3,147,029	-		Sama_2627	0.75	-3.0
3,147,054	-		Sama_2627	0.77	-1.5
3,147,054	-		Sama_2627	0.77	-1.7
3,147,054	-		Sama_2627	0.77	-2.7
3,147,076	-		Sama_2627	0.77	-3.1
3,147,090	+		Sama_2627	0.78	-3.4
3,147,090	+		Sama_2627	0.78	-2.7
3,147,090	+		Sama_2627	0.78	-2.2
3,147,091	-		Sama_2627	0.78	-1.9
3,147,133	-		Sama_2627	0.80	-3.5
3,147,133	-		Sama_2627	0.80	-3.4
3,147,133	-		Sama_2627	0.80	-4.5
3,147,218	+		Sama_2627	0.84	-3.2
3,147,218	+		Sama_2627	0.84	-0.5
3,147,218	+		Sama_2627	0.84	-3.0
3,147,218	+		Sama_2627	0.84	-3.0
3,147,218	+		Sama_2627	0.84	-1.9
3,147,218	+		Sama_2627	0.84	-3.5
3,147,218	+		Sama_2627	0.84	-2.9
3,147,219	-		Sama_2627	0.84	-3.1
3,147,219	-		Sama_2627	0.84	-3.3
3,147,219	-		Sama_2627	0.84	-3.8
3,147,219	-		Sama_2627	0.84	-1.8
3,147,222	+		Sama_2627	0.84	-3.9
3,147,222	+		Sama_2627	0.84	-4.4
3,147,222	+		Sama_2627	0.84	-3.2
3,147,222	+		Sama_2627	0.84	-3.8
3,147,222	+		Sama_2627	0.84	-0.9
3,147,222	+		Sama_2627	0.84	-2.2
3,147,223	-		Sama_2627	0.84	-2.0
3,147,223	-		Sama_2627	0.84	-2.2
3,147,223	-		Sama_2627	0.84	-4.2
3,147,223	-		Sama_2627	0.84	-3.5
3,147,223	-		Sama_2627	0.84	-2.5
3,147,223	-		Sama_2627	0.84	-3.6
3,147,223	-		Sama_2627	0.84	-2.2
3,147,223	-		Sama_2627	0.84	-1.7
3,147,228	+		Sama_2627	0.84	-3.0
3,147,228	+		Sama_2627	0.84	-2.4
3,147,229	-		Sama_2627	0.84	-3.0
3,147,229	-		Sama_2627	0.84	-1.6
3,147,243	+		Sama_2627	0.85	-2.5
3,147,243	+		Sama_2627	0.85	-2.2
3,147,244	-		Sama_2627	0.85	-2.4
3,147,244	-		Sama_2627	0.85	-2.7
3,147,244	-		Sama_2627	0.85	-2.2
3,147,244	-		Sama_2627	0.85	-1.6
3,147,314	-		Sama_2627	0.88	-1.4
3,147,393	+				-3.2
3,147,393	+				-3.0
3,147,393	+				-2.2
3,147,393	+				-3.3
3,147,394	-				-3.8
3,147,394	-				-4.1
3,147,394	-				-2.0
3,147,394	-				-3.0
3,147,394	-				-1.7
3,147,396	+				-2.4
3,147,396	+				-3.5
3,147,397	-				-5.5
3,147,397	-				-2.3
3,147,397	-				-3.0
3,147,397	-				-2.5
3,147,397	-				-2.1
3,147,516	+				-3.2
3,147,554	+				-2.0
3,147,574	+				-3.9
3,147,606	+				-2.3
3,147,607	-				-1.5
3,147,607	-				-2.8
3,147,609	+				-3.4
3,147,610	-				-1.3
3,147,653	+				-2.2
3,147,677	+				-2.3
3,147,686	-				-1.8
3,147,746	+				-3.3
3,147,746	+				-4.6
3,147,747	-				-2.1
3,147,747	-				-3.3
3,147,747	-				-3.0
3,147,747	-				-1.2
3,147,755	+				-2.4
3,147,755	+				-2.5
3,147,756	-				-2.2
3,147,761	+				-1.5
3,147,761	+				-2.4
3,147,761	+				-3.5
3,147,761	+				-3.9
3,147,761	+				-2.6
3,147,761	+				-2.0
3,147,761	+				-1.8
3,147,762	-				-2.0
3,147,762	-				-3.9
3,147,862	-		Sama_2628	0.12	-1.9
3,147,995	+		Sama_2628	0.27	-3.3
3,147,995	+		Sama_2628	0.27	-2.1
3,147,996	-		Sama_2628	0.27	-1.7
3,148,082	+		Sama_2628	0.37	-1.7
3,148,082	+		Sama_2628	0.37	-2.3
3,148,083	-		Sama_2628	0.37	-2.1
3,148,124	+		Sama_2628	0.41	-2.3
3,148,124	+		Sama_2628	0.41	-1.7
3,148,124	+		Sama_2628	0.41	-3.0
3,148,124	+		Sama_2628	0.41	-2.3
3,148,184	+		Sama_2628	0.48	-3.4
3,148,184	+		Sama_2628	0.48	-4.4
3,148,185	-		Sama_2628	0.48	-3.1
3,148,222	+		Sama_2628	0.52	-2.4
3,148,222	+		Sama_2628	0.52	-3.5
3,148,222	+		Sama_2628	0.52	-1.6
3,148,222	+		Sama_2628	0.52	-1.6
3,148,222	+		Sama_2628	0.52	-1.8
3,148,222	+		Sama_2628	0.52	-1.6
3,148,326	+		Sama_2628	0.64	-3.6
3,148,326	+		Sama_2628	0.64	-2.7
3,148,326	+		Sama_2628	0.64	-1.7
3,148,327	-		Sama_2628	0.64	-1.7
3,148,327	-		Sama_2628	0.64	-2.0
3,148,327	-		Sama_2628	0.64	-2.9
3,148,327	-		Sama_2628	0.64	+0.2
3,148,327	-		Sama_2628	0.64	-0.9
3,148,328	+		Sama_2628	0.64	-3.4
3,148,328	+		Sama_2628	0.64	-1.4
3,148,328	+		Sama_2628	0.64	-2.0
3,148,328	+		Sama_2628	0.64	-1.1
3,148,328	+		Sama_2628	0.64	-2.1
3,148,328	+		Sama_2628	0.64	-3.6
3,148,328	+		Sama_2628	0.64	-2.6
3,148,328	+		Sama_2628	0.64	-1.9
3,148,328	+		Sama_2628	0.64	-2.6
3,148,328	+		Sama_2628	0.64	-2.8
3,148,328	+		Sama_2628	0.64	-1.7
3,148,328	+		Sama_2628	0.64	-3.3
3,148,328	+		Sama_2628	0.64	-2.8
3,148,328	+		Sama_2628	0.64	-1.1
3,148,328	+		Sama_2628	0.64	-3.2
3,148,329	-		Sama_2628	0.64	-3.0
3,148,329	-		Sama_2628	0.64	-2.9
3,148,329	-		Sama_2628	0.64	-3.5
3,148,329	-		Sama_2628	0.64	-3.5
3,148,329	-		Sama_2628	0.64	+0.1
3,148,329	-		Sama_2628	0.64	-3.3
3,148,329	-		Sama_2628	0.64	-3.6
3,148,329	-		Sama_2628	0.64	-2.4
3,148,329	-		Sama_2628	0.64	+0.5
3,148,329	-		Sama_2628	0.64	-1.9
3,148,329	-		Sama_2628	0.64	-1.9
3,148,329	-		Sama_2628	0.64	-4.1
3,148,329	-		Sama_2628	0.64	-3.1
3,148,329	-		Sama_2628	0.64	-2.2
3,148,329	-		Sama_2628	0.64	-4.2
3,148,329	-		Sama_2628	0.64	-0.9
3,148,333	+		Sama_2628	0.65	-2.8
3,148,376	+		Sama_2628	0.69	-1.5
3,148,376	+		Sama_2628	0.69	-2.8
3,148,461	+		Sama_2628	0.79	-1.7
3,148,461	+		Sama_2628	0.79	-3.3
3,148,461	+		Sama_2628	0.79	-3.9
3,148,461	+		Sama_2628	0.79	-3.5
3,148,462	-		Sama_2628	0.79	-1.3
3,148,462	-		Sama_2628	0.79	-3.4
3,148,462	-		Sama_2628	0.79	-3.0
3,148,463	+		Sama_2628	0.79	-3.0
3,148,463	+		Sama_2628	0.79	-2.2
3,148,463	+		Sama_2628	0.79	-2.4
3,148,463	+		Sama_2628	0.79	-3.5
3,148,507	-		Sama_2628	0.84	-2.7
3,148,565	-				-1.9