Strain Fitness in Shewanella amazonensis SB2B around Sama_2145

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
2,589,170	+		Sama_2143	0.85	-0.5
2,589,192	-		Sama_2143	0.87	+0.2
2,589,195	+		Sama_2143	0.87	-1.3
2,589,206	+		Sama_2143	0.88	+0.8
2,589,206	+		Sama_2143	0.88	+0.5
2,589,206	+		Sama_2143	0.88	-1.8
2,589,206	+		Sama_2143	0.88	+0.1
2,589,206	+		Sama_2143	0.88	+0.1
2,589,207	-		Sama_2143	0.88	-1.9
2,589,207	-		Sama_2143	0.88	-1.3
2,589,207	-		Sama_2143	0.88	+1.8
2,589,207	-		Sama_2143	0.88	-0.5
2,589,264	+				-0.3
2,589,264	+				-0.3
2,589,282	+				+0.8
2,589,282	+				-0.3
2,589,283	-				-1.4
2,589,290	+				-0.2
2,589,290	+				-0.7
2,589,291	-				+2.7
2,589,291	-				-0.4
2,589,302	+				-1.5
2,589,302	+				-0.4
2,589,303	-				+1.3
2,589,303	-				+1.8
2,589,303	-				-0.3
2,589,364	-				-0.6
2,589,371	-				+1.7
2,589,388	+				+2.4
2,589,399	+				-1.5
2,589,421	+				+2.1
2,589,421	+				+0.4
2,589,421	+				-1.5
2,589,421	+				-1.3
2,589,421	+				-1.0
2,589,422	-				-0.3
2,589,422	-				+0.5
2,589,422	-				+0.2
2,589,422	-				+2.9
2,589,423	+				-0.9
2,589,423	+				-1.7
2,589,423	+				+0.8
2,589,423	+				+0.7
2,589,423	+				+0.4
2,589,423	+				-1.5
2,589,423	+				+1.3
2,589,423	+				-0.0
2,589,423	+				+0.3
2,589,423	+				+0.5
2,589,423	+				+0.7
2,589,424	-				-0.6
2,589,424	-				+2.1
2,589,424	-				+0.3
2,589,424	-				-0.7
2,589,424	-				-1.5
2,589,424	-				-0.3
2,589,424	-				-1.6
2,589,436	+				+0.1
2,589,437	-				-0.1
2,589,437	-				-0.5
2,589,503	-				-0.1
2,589,503	-				-0.2
2,589,503	-				-0.8
2,589,530	+				+0.8
2,589,531	-				-1.0
2,589,531	-				-1.5
2,589,531	-				+1.0
2,589,533	+				+3.5
2,589,542	-				-0.0
2,589,580	+		Sama_2144	0.13	+0.9
2,589,580	+		Sama_2144	0.13	-1.3
2,589,581	-		Sama_2144	0.14	-0.1
2,589,581	-		Sama_2144	0.14	-0.5
2,589,604	+		Sama_2144	0.26	-0.5
2,589,604	+		Sama_2144	0.26	+0.9
2,589,604	+		Sama_2144	0.26	-0.6
2,589,605	-		Sama_2144	0.26	-1.0
2,589,653	-		Sama_2144	0.52	-1.0
2,589,653	-		Sama_2144	0.52	-0.3
2,589,653	-		Sama_2144	0.52	-0.5
2,589,730	-				-0.3
2,589,774	-				-0.6
2,589,774	-				+0.3
2,589,797	+				+0.0
2,589,797	+				-0.4
2,589,798	-				-0.6
2,589,844	-				+0.8
2,589,860	+				+0.1
2,589,860	+				-0.4
2,589,861	-				-0.0
2,589,865	+				-0.1
2,589,865	+				-2.3
2,589,866	-				-0.5
2,589,894	+				-0.6
2,589,894	+				-1.3
2,589,894	+				-0.6
2,589,895	-				+0.3
2,589,972	+				+0.7
2,589,973	-				+2.0
2,589,973	-				+1.7
2,590,182	+				+2.4
2,590,182	+				+0.9
2,590,182	+				-0.7
2,590,183	-				+0.6
2,590,193	+		Sama_2145	0.10	-0.4
2,590,194	-		Sama_2145	0.10	-0.1
2,590,215	+		Sama_2145	0.11	-0.3
2,590,216	-		Sama_2145	0.11	-1.7
2,590,249	-		Sama_2145	0.13	+0.8
2,590,285	+		Sama_2145	0.15	-0.6
2,590,286	-		Sama_2145	0.15	+1.0
2,590,320	+		Sama_2145	0.16	-1.0
2,590,347	+		Sama_2145	0.18	-0.5
2,590,347	+		Sama_2145	0.18	+1.4
2,590,411	+		Sama_2145	0.21	+1.4
2,590,411	+		Sama_2145	0.21	+0.7
2,590,412	-		Sama_2145	0.21	+0.0
2,590,412	-		Sama_2145	0.21	+1.2
2,590,413	+		Sama_2145	0.21	+0.8
2,590,413	+		Sama_2145	0.21	+0.4
2,590,413	+		Sama_2145	0.21	+0.6
2,590,413	+		Sama_2145	0.21	+3.2
2,590,414	-		Sama_2145	0.21	+1.0
2,590,414	-		Sama_2145	0.21	-0.9
2,590,414	-		Sama_2145	0.21	-0.9
2,590,414	-		Sama_2145	0.21	-0.2
2,590,414	-		Sama_2145	0.21	+2.5
2,590,419	+		Sama_2145	0.21	-0.6
2,590,419	+		Sama_2145	0.21	-0.3
2,590,419	+		Sama_2145	0.21	-0.1
2,590,420	-		Sama_2145	0.21	-0.3
2,590,420	-		Sama_2145	0.21	+1.2
2,590,517	-		Sama_2145	0.26	-0.4
2,590,552	-		Sama_2145	0.27	+0.9
2,590,552	-		Sama_2145	0.27	+0.7
2,590,642	+		Sama_2145	0.32	-1.0
2,590,683	+		Sama_2145	0.34	+0.4
2,590,689	+		Sama_2145	0.34	+0.8
2,590,720	-		Sama_2145	0.36	-1.4
2,590,758	-		Sama_2145	0.37	-0.5
2,590,778	+		Sama_2145	0.38	+0.3
2,590,779	-		Sama_2145	0.38	-0.0
2,590,779	-		Sama_2145	0.38	-1.3
2,590,801	-		Sama_2145	0.39	-2.8
2,590,837	+		Sama_2145	0.41	+0.2
2,590,860	+		Sama_2145	0.42	+2.7
2,590,860	+		Sama_2145	0.42	+4.8
2,590,861	-		Sama_2145	0.42	-1.8
2,591,010	-		Sama_2145	0.49	+0.1
2,591,013	+		Sama_2145	0.50	+2.9
2,591,014	-		Sama_2145	0.50	+0.3
2,591,014	-		Sama_2145	0.50	-0.0
2,591,014	-		Sama_2145	0.50	-0.3
2,591,116	-		Sama_2145	0.55	-0.5
2,591,117	+		Sama_2145	0.55	+0.3
2,591,117	+		Sama_2145	0.55	-0.8
2,591,117	+		Sama_2145	0.55	-0.3
2,591,117	+		Sama_2145	0.55	+0.7
2,591,117	+		Sama_2145	0.55	+3.3
2,591,118	-		Sama_2145	0.55	+0.7
2,591,118	-		Sama_2145	0.55	+0.6
2,591,118	-		Sama_2145	0.55	+1.1
2,591,246	+		Sama_2145	0.61	+1.3
2,591,246	+		Sama_2145	0.61	-0.8
2,591,247	-		Sama_2145	0.61	-0.7
2,591,247	-		Sama_2145	0.61	-0.5
2,591,247	-		Sama_2145	0.61	+0.9
2,591,327	+		Sama_2145	0.65	+0.6
2,591,328	-		Sama_2145	0.65	+0.2
2,591,386	+		Sama_2145	0.67	+0.9
2,591,454	-		Sama_2145	0.71	-1.1
2,591,466	+		Sama_2145	0.71	+0.7
2,591,466	+		Sama_2145	0.71	-1.5
2,591,467	-		Sama_2145	0.71	+0.5
2,591,477	+		Sama_2145	0.72	-1.7
2,591,647	+		Sama_2145	0.80	+1.1
2,591,647	+		Sama_2145	0.80	-0.2
2,591,647	+		Sama_2145	0.80	-0.0
2,591,648	-		Sama_2145	0.80	-0.8
2,591,715	+		Sama_2145	0.83	+0.3
2,591,729	-		Sama_2145	0.84	+0.8
2,591,819	+		Sama_2145	0.88	-0.2
2,591,820	-		Sama_2145	0.88	+2.7
2,591,831	+		Sama_2145	0.89	-0.2
2,591,857	+				-0.8
2,591,858	-				+1.1
2,591,868	+				-0.5
2,591,869	-				+1.8
2,591,904	+				-0.9
2,591,904	+				-0.7
2,591,904	+				+1.2
2,591,905	-				+0.6
2,591,905	-				+2.4
2,591,905	-				-0.9
2,591,906	+				-1.2
2,591,906	+				-0.2
2,591,907	-				-1.4
2,591,981	+				-0.5
2,591,981	+				-0.3
2,591,981	+				-0.4
2,591,981	+				-0.4
2,591,981	+				-0.2
2,592,103	-				-1.5
2,592,113	+				+0.2
2,592,113	+				-1.3
2,592,113	+				-0.6
2,592,114	-				-1.9
2,592,133	+				+1.4
2,592,133	+				-1.8
2,592,161	+				-1.5
2,592,181	+				+1.6
2,592,225	+				+0.4
2,592,225	+				-0.7
2,592,225	+				+0.4
2,592,225	+				+1.5
2,592,225	+				-1.1
2,592,226	-				-0.2
2,592,226	-				+0.3
2,592,227	+				-1.5
2,592,227	+				-0.3
2,592,227	+				+0.6
2,592,228	-				+0.5
2,592,228	-				-0.6
2,592,228	-				-0.1
2,592,228	-				-0.8
2,592,228	-				+0.7
2,592,240	+				+1.2
2,592,288	+				-0.0
2,592,352	+				-0.6
2,592,363	+				-0.1
2,592,363	+				-1.1
2,592,363	+				+1.5
2,592,363	+				-1.1
2,592,363	+				-0.4
2,592,364	-				+0.2
2,592,364	-				+1.2
2,592,364	-				+0.6
2,592,474	-				+0.6
2,592,478	-				-0.9
2,592,487	+				-0.3
2,592,488	-				-0.9
2,592,496	-				+1.6
2,592,603	-				+0.7
2,592,603	-				-1.4
2,592,630	-				-1.7
2,592,630	-				-1.7
2,592,630	-				-3.4
2,592,723	+		Sama_2146	0.15	-1.3
2,592,803	-		Sama_2146	0.20	-1.5
2,592,809	+		Sama_2146	0.20	-1.9
2,592,809	+		Sama_2146	0.20	-3.1
2,592,851	+		Sama_2146	0.23	-1.9
2,592,852	-		Sama_2146	0.23	-3.5
2,592,852	-		Sama_2146	0.23	+0.4
2,592,852	-		Sama_2146	0.23	-2.5
2,592,852	-		Sama_2146	0.23	-2.7
2,592,906	+		Sama_2146	0.27	-2.0
2,592,907	-		Sama_2146	0.27	-0.6
2,592,997	-		Sama_2146	0.33	-1.7
2,592,997	-		Sama_2146	0.33	-2.4
2,593,027	-		Sama_2146	0.35	-2.2
2,593,038	-		Sama_2146	0.35	-2.5
2,593,038	-		Sama_2146	0.35	-3.4
2,593,049	-		Sama_2146	0.36	-3.4