Strain Fitness in Shewanella amazonensis SB2B around Sama_1574

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1572 and Sama_1573 are separated by 32 nucleotidesSama_1573 and Sama_1574 are separated by 196 nucleotidesSama_1574 and Sama_1575 are separated by 8 nucleotidesSama_1575 and Sama_1576 are separated by 234 nucleotides Sama_1572: Sama_1572 - hypothetical protein (RefSeq), at 1,916,605 to 1,916,964 _1572 Sama_1573: Sama_1573 - hypothetical protein (RefSeq), at 1,916,997 to 1,917,467 _1573 Sama_1574: Sama_1574 - ABC transporter (RefSeq), at 1,917,664 to 1,918,443 _1574 Sama_1575: Sama_1575 - hypothetical protein (RefSeq), at 1,918,452 to 1,918,859 _1575 Sama_1576: Sama_1576 - hypothetical protein (RefSeq), at 1,919,094 to 1,920,017 _1576 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1916.670 kb on + strand, within Sama_1572at 1916.674 kb on + strand, within Sama_1572at 1916.674 kb on + strand, within Sama_1572at 1916.674 kb on + strand, within Sama_1572at 1916.675 kb on - strand, within Sama_1572at 1916.675 kb on - strand, within Sama_1572at 1916.675 kb on - strand, within Sama_1572at 1916.675 kb on - strand, within Sama_1572at 1916.675 kb on - strand, within Sama_1572at 1916.675 kb on - strand, within Sama_1572at 1916.726 kb on + strand, within Sama_1572at 1916.726 kb on + strand, within Sama_1572at 1916.727 kb on - strand, within Sama_1572at 1916.855 kb on + strand, within Sama_1572at 1916.855 kb on + strand, within Sama_1572at 1916.856 kb on - strand, within Sama_1572at 1916.856 kb on - strand, within Sama_1572at 1916.856 kb on - strand, within Sama_1572at 1916.869 kb on - strand, within Sama_1572at 1916.991 kb on + strandat 1917.057 kb on + strand, within Sama_1573at 1917.058 kb on - strand, within Sama_1573at 1917.059 kb on + strand, within Sama_1573at 1917.060 kb on - strand, within Sama_1573at 1917.064 kb on - strand, within Sama_1573at 1917.064 kb on - strand, within Sama_1573at 1917.081 kb on + strand, within Sama_1573at 1917.081 kb on + strand, within Sama_1573at 1917.092 kb on + strand, within Sama_1573at 1917.092 kb on + strand, within Sama_1573at 1917.093 kb on - strand, within Sama_1573at 1917.162 kb on + strand, within Sama_1573at 1917.163 kb on - strand, within Sama_1573at 1917.163 kb on - strand, within Sama_1573at 1917.214 kb on + strand, within Sama_1573at 1917.242 kb on + strand, within Sama_1573at 1917.243 kb on - strand, within Sama_1573at 1917.310 kb on + strand, within Sama_1573at 1917.367 kb on + strand, within Sama_1573at 1917.460 kb on + strandat 1917.501 kb on + strandat 1917.501 kb on + strandat 1917.501 kb on + strandat 1917.547 kb on + strandat 1917.578 kb on + strandat 1917.579 kb on - strandat 1917.579 kb on - strandat 1917.610 kb on + strandat 1917.610 kb on + strandat 1917.611 kb on - strandat 1917.611 kb on - strandat 1917.612 kb on + strandat 1917.612 kb on + strandat 1917.612 kb on + strandat 1917.612 kb on + strandat 1917.613 kb on - strandat 1917.613 kb on - strandat 1917.613 kb on - strandat 1917.613 kb on - strandat 1917.663 kb on + strandat 1917.664 kb on - strandat 1917.664 kb on - strandat 1917.684 kb on - strandat 1917.684 kb on - strandat 1917.795 kb on + strand, within Sama_1574at 1917.796 kb on - strand, within Sama_1574at 1917.808 kb on + strand, within Sama_1574at 1917.808 kb on + strand, within Sama_1574at 1917.808 kb on + strand, within Sama_1574at 1917.942 kb on + strand, within Sama_1574at 1917.942 kb on + strand, within Sama_1574at 1917.943 kb on - strand, within Sama_1574at 1917.943 kb on - strand, within Sama_1574at 1917.943 kb on - strand, within Sama_1574at 1917.943 kb on - strand, within Sama_1574at 1917.958 kb on + strand, within Sama_1574at 1917.970 kb on + strand, within Sama_1574at 1917.971 kb on - strand, within Sama_1574at 1917.973 kb on + strand, within Sama_1574at 1917.973 kb on + strand, within Sama_1574at 1917.974 kb on - strand, within Sama_1574at 1918.088 kb on - strand, within Sama_1574at 1918.103 kb on + strand, within Sama_1574at 1918.104 kb on - strand, within Sama_1574at 1918.111 kb on + strand, within Sama_1574at 1918.111 kb on + strand, within Sama_1574at 1918.112 kb on - strand, within Sama_1574at 1918.112 kb on - strand, within Sama_1574at 1918.112 kb on - strand, within Sama_1574at 1918.112 kb on - strand, within Sama_1574at 1918.112 kb on - strand, within Sama_1574at 1918.215 kb on + strand, within Sama_1574at 1918.215 kb on + strand, within Sama_1574at 1918.216 kb on - strand, within Sama_1574at 1918.232 kb on + strand, within Sama_1574at 1918.232 kb on + strand, within Sama_1574at 1918.240 kb on + strand, within Sama_1574at 1918.240 kb on + strand, within Sama_1574at 1918.240 kb on + strand, within Sama_1574at 1918.241 kb on - strand, within Sama_1574at 1918.252 kb on + strand, within Sama_1574at 1918.313 kb on + strand, within Sama_1574at 1918.313 kb on + strand, within Sama_1574at 1918.333 kb on + strand, within Sama_1574at 1918.335 kb on + strand, within Sama_1574at 1918.336 kb on - strand, within Sama_1574at 1918.344 kb on + strand, within Sama_1574at 1918.351 kb on - strand, within Sama_1574at 1918.509 kb on - strand, within Sama_1575at 1918.509 kb on - strand, within Sama_1575at 1918.519 kb on - strand, within Sama_1575at 1918.519 kb on - strand, within Sama_1575at 1918.519 kb on - strand, within Sama_1575at 1918.519 kb on - strand, within Sama_1575at 1918.548 kb on - strand, within Sama_1575at 1918.612 kb on - strand, within Sama_1575at 1918.612 kb on - strand, within Sama_1575at 1918.612 kb on - strand, within Sama_1575at 1918.612 kb on - strand, within Sama_1575at 1918.613 kb on + strand, within Sama_1575at 1918.613 kb on + strand, within Sama_1575at 1918.613 kb on + strand, within Sama_1575at 1918.613 kb on + strand, within Sama_1575at 1918.613 kb on + strand, within Sama_1575at 1918.613 kb on + strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.614 kb on - strand, within Sama_1575at 1918.723 kb on - strand, within Sama_1575at 1918.757 kb on + strand, within Sama_1575at 1918.757 kb on + strand, within Sama_1575at 1918.758 kb on - strand, within Sama_1575at 1918.758 kb on - strand, within Sama_1575at 1918.818 kb on + strand, within Sama_1575at 1918.819 kb on - strandat 1918.836 kb on - strandat 1918.836 kb on - strandat 1918.836 kb on - strandat 1918.836 kb on - strandat 1918.836 kb on - strandat 1918.840 kb on - strandat 1919.002 kb on + strandat 1919.002 kb on + strandat 1919.002 kb on + strandat 1919.002 kb on + strandat 1919.003 kb on - strandat 1919.003 kb on - strandat 1919.113 kb on + strandat 1919.164 kb on + strandat 1919.253 kb on + strand, within Sama_1576at 1919.253 kb on + strand, within Sama_1576at 1919.328 kb on + strand, within Sama_1576at 1919.328 kb on + strand, within Sama_1576at 1919.328 kb on + strand, within Sama_1576at 1919.329 kb on - strand, within Sama_1576at 1919.329 kb on - strand, within Sama_1576at 1919.355 kb on + strand, within Sama_1576at 1919.355 kb on + strand, within Sama_1576at 1919.376 kb on + strand, within Sama_1576at 1919.376 kb on + strand, within Sama_1576at 1919.376 kb on + strand, within Sama_1576at 1919.416 kb on + strand, within Sama_1576

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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1,916,670 + Sama_1572 0.18 +3.9
1,916,674 + Sama_1572 0.19 -1.4
1,916,674 + Sama_1572 0.19 +1.0
1,916,674 + Sama_1572 0.19 +0.0
1,916,675 - Sama_1572 0.19 +0.8
1,916,675 - Sama_1572 0.19 +0.5
1,916,675 - Sama_1572 0.19 +2.6
1,916,675 - Sama_1572 0.19 +0.4
1,916,675 - Sama_1572 0.19 +1.7
1,916,675 - Sama_1572 0.19 +0.1
1,916,726 + Sama_1572 0.34 -0.6
1,916,726 + Sama_1572 0.34 -0.9
1,916,727 - Sama_1572 0.34 +1.8
1,916,855 + Sama_1572 0.69 -0.2
1,916,855 + Sama_1572 0.69 -2.6
1,916,856 - Sama_1572 0.70 +0.8
1,916,856 - Sama_1572 0.70 +1.1
1,916,856 - Sama_1572 0.70 +0.4
1,916,869 - Sama_1572 0.73 -0.5
1,916,991 + -0.3
1,917,057 + Sama_1573 0.13 -0.5
1,917,058 - Sama_1573 0.13 -2.0
1,917,059 + Sama_1573 0.13 -0.6
1,917,060 - Sama_1573 0.13 -1.3
1,917,064 - Sama_1573 0.14 +0.0
1,917,064 - Sama_1573 0.14 -0.3
1,917,081 + Sama_1573 0.18 +2.8
1,917,081 + Sama_1573 0.18 -0.5
1,917,092 + Sama_1573 0.20 -1.2
1,917,092 + Sama_1573 0.20 -2.9
1,917,093 - Sama_1573 0.20 -0.2
1,917,162 + Sama_1573 0.35 -0.3
1,917,163 - Sama_1573 0.35 -0.2
1,917,163 - Sama_1573 0.35 -1.7
1,917,214 + Sama_1573 0.46 -2.1
1,917,242 + Sama_1573 0.52 +0.1
1,917,243 - Sama_1573 0.52 +0.4
1,917,310 + Sama_1573 0.66 +1.5
1,917,367 + Sama_1573 0.79 -0.1
1,917,460 + +1.0
1,917,501 + +0.0
1,917,501 + +0.1
1,917,501 + -0.6
1,917,547 + -3.2
1,917,578 + -1.1
1,917,579 - +1.1
1,917,579 - -0.6
1,917,610 + +3.5
1,917,610 + +0.1
1,917,611 - -0.5
1,917,611 - +1.0
1,917,612 + -0.3
1,917,612 + +0.6
1,917,612 + +0.0
1,917,612 + +0.8
1,917,613 - +1.5
1,917,613 - -1.3
1,917,613 - -0.4
1,917,613 - -0.7
1,917,663 + -0.5
1,917,664 - -0.0
1,917,664 - -0.1
1,917,684 - +0.0
1,917,684 - +1.8
1,917,795 + Sama_1574 0.17 +0.3
1,917,796 - Sama_1574 0.17 -1.2
1,917,808 + Sama_1574 0.18 -1.8
1,917,808 + Sama_1574 0.18 +0.8
1,917,808 + Sama_1574 0.18 -0.6
1,917,942 + Sama_1574 0.36 +1.0
1,917,942 + Sama_1574 0.36 -2.9
1,917,943 - Sama_1574 0.36 +1.7
1,917,943 - Sama_1574 0.36 -0.2
1,917,943 - Sama_1574 0.36 +0.4
1,917,943 - Sama_1574 0.36 +0.1
1,917,958 + Sama_1574 0.38 +0.4
1,917,970 + Sama_1574 0.39 -0.6
1,917,971 - Sama_1574 0.39 +0.8
1,917,973 + Sama_1574 0.40 +0.2
1,917,973 + Sama_1574 0.40 -1.6
1,917,974 - Sama_1574 0.40 -0.1
1,918,088 - Sama_1574 0.54 -0.5
1,918,103 + Sama_1574 0.56 -2.1
1,918,104 - Sama_1574 0.56 -2.2
1,918,111 + Sama_1574 0.57 +0.2
1,918,111 + Sama_1574 0.57 -0.3
1,918,112 - Sama_1574 0.57 -0.4
1,918,112 - Sama_1574 0.57 -0.3
1,918,112 - Sama_1574 0.57 -1.9
1,918,112 - Sama_1574 0.57 -0.7
1,918,112 - Sama_1574 0.57 +0.7
1,918,215 + Sama_1574 0.71 -0.3
1,918,215 + Sama_1574 0.71 +0.8
1,918,216 - Sama_1574 0.71 -0.4
1,918,232 + Sama_1574 0.73 -0.5
1,918,232 + Sama_1574 0.73 -1.2
1,918,240 + Sama_1574 0.74 -0.3
1,918,240 + Sama_1574 0.74 +3.8
1,918,240 + Sama_1574 0.74 -0.1
1,918,241 - Sama_1574 0.74 +2.5
1,918,252 + Sama_1574 0.75 -0.1
1,918,313 + Sama_1574 0.83 +1.2
1,918,313 + Sama_1574 0.83 +0.1
1,918,333 + Sama_1574 0.86 -0.6
1,918,335 + Sama_1574 0.86 -0.6
1,918,336 - Sama_1574 0.86 +0.7
1,918,344 + Sama_1574 0.87 +0.5
1,918,351 - Sama_1574 0.88 -0.7
1,918,509 - Sama_1575 0.14 -2.7
1,918,509 - Sama_1575 0.14 -1.0
1,918,519 - Sama_1575 0.16 +0.4
1,918,519 - Sama_1575 0.16 -0.9
1,918,519 - Sama_1575 0.16 -0.0
1,918,519 - Sama_1575 0.16 +1.9
1,918,548 - Sama_1575 0.24 +4.3
1,918,612 - Sama_1575 0.39 +0.3
1,918,612 - Sama_1575 0.39 -0.9
1,918,612 - Sama_1575 0.39 -0.8
1,918,612 - Sama_1575 0.39 +0.9
1,918,613 + Sama_1575 0.39 +0.1
1,918,613 + Sama_1575 0.39 -0.3
1,918,613 + Sama_1575 0.39 +1.5
1,918,613 + Sama_1575 0.39 -1.2
1,918,613 + Sama_1575 0.39 -2.6
1,918,613 + Sama_1575 0.39 +0.7
1,918,614 - Sama_1575 0.40 -0.8
1,918,614 - Sama_1575 0.40 -1.6
1,918,614 - Sama_1575 0.40 -0.3
1,918,614 - Sama_1575 0.40 -0.7
1,918,614 - Sama_1575 0.40 -1.4
1,918,614 - Sama_1575 0.40 -0.9
1,918,614 - Sama_1575 0.40 +3.0
1,918,614 - Sama_1575 0.40 -0.1
1,918,614 - Sama_1575 0.40 -0.4
1,918,723 - Sama_1575 0.66 +0.2
1,918,757 + Sama_1575 0.75 -0.2
1,918,757 + Sama_1575 0.75 +3.0
1,918,758 - Sama_1575 0.75 -1.0
1,918,758 - Sama_1575 0.75 -0.2
1,918,818 + Sama_1575 0.90 +0.0
1,918,819 - -0.2
1,918,836 - +0.5
1,918,836 - -0.8
1,918,836 - +1.9
1,918,836 - -1.1
1,918,836 - +0.1
1,918,840 - -0.6
1,919,002 + -2.0
1,919,002 + +1.2
1,919,002 + -1.3
1,919,002 + -1.2
1,919,003 - -0.9
1,919,003 - +0.9
1,919,113 + -0.1
1,919,164 + +0.4
1,919,253 + Sama_1576 0.17 -0.9
1,919,253 + Sama_1576 0.17 +0.6
1,919,328 + Sama_1576 0.25 +0.9
1,919,328 + Sama_1576 0.25 +0.7
1,919,328 + Sama_1576 0.25 -0.3
1,919,329 - Sama_1576 0.25 -0.1
1,919,329 - Sama_1576 0.25 -1.1
1,919,355 + Sama_1576 0.28 -0.3
1,919,355 + Sama_1576 0.28 +0.5
1,919,376 + Sama_1576 0.31 -2.4
1,919,376 + Sama_1576 0.31 +0.4
1,919,376 + Sama_1576 0.31 -1.5
1,919,416 + Sama_1576 0.35 -0.5

Or see this region's nucleotide sequence