Strain Fitness in Shewanella amazonensis SB2B around Sama_1190

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
1,457,476	+		Sama_1189	0.58	-2.0
1,457,477	-		Sama_1189	0.58	+0.5
1,457,526	+		Sama_1189	0.61	-1.1
1,457,526	+		Sama_1189	0.61	-1.1
1,457,526	+		Sama_1189	0.61	-0.6
1,457,526	+		Sama_1189	0.61	-1.0
1,457,526	+		Sama_1189	0.61	-2.1
1,457,526	+		Sama_1189	0.61	-2.2
1,457,526	+		Sama_1189	0.61	-2.4
1,457,526	+		Sama_1189	0.61	-1.7
1,457,526	+		Sama_1189	0.61	-1.1
1,457,526	+		Sama_1189	0.61	-2.6
1,457,526	+		Sama_1189	0.61	-1.4
1,457,526	+		Sama_1189	0.61	-2.1
1,457,527	-		Sama_1189	0.61	-2.5
1,457,527	-		Sama_1189	0.61	-2.6
1,457,527	-		Sama_1189	0.61	-2.0
1,457,527	-		Sama_1189	0.61	-2.2
1,457,528	+		Sama_1189	0.61	-2.5
1,457,528	+		Sama_1189	0.61	-1.7
1,457,528	+		Sama_1189	0.61	-3.4
1,457,528	+		Sama_1189	0.61	-1.0
1,457,528	+		Sama_1189	0.61	+0.1
1,457,528	+		Sama_1189	0.61	-2.8
1,457,528	+		Sama_1189	0.61	-2.7
1,457,529	-		Sama_1189	0.61	-3.6
1,457,529	-		Sama_1189	0.61	-2.5
1,457,529	-		Sama_1189	0.61	+0.6
1,457,566	+		Sama_1189	0.63	-2.2
1,457,566	+		Sama_1189	0.63	-1.3
1,457,566	+		Sama_1189	0.63	-3.5
1,457,581	+		Sama_1189	0.64	-2.6
1,457,581	+		Sama_1189	0.64	-1.6
1,457,581	+		Sama_1189	0.64	-4.4
1,457,581	+		Sama_1189	0.64	-1.7
1,457,581	+		Sama_1189	0.64	-3.7
1,457,582	-		Sama_1189	0.64	-2.2
1,457,582	-		Sama_1189	0.64	+0.0
1,457,582	-		Sama_1189	0.64	-3.3
1,457,582	-		Sama_1189	0.64	-0.8
1,457,582	-		Sama_1189	0.64	-1.4
1,457,583	+		Sama_1189	0.64	-1.0
1,457,583	+		Sama_1189	0.64	-2.2
1,457,583	+		Sama_1189	0.64	-1.6
1,457,583	+		Sama_1189	0.64	-2.3
1,457,584	-		Sama_1189	0.64	-0.2
1,457,584	-		Sama_1189	0.64	-1.7
1,457,601	+		Sama_1189	0.65	-4.5
1,457,602	-		Sama_1189	0.65	-3.7
1,457,616	+		Sama_1189	0.66	-3.1
1,457,616	+		Sama_1189	0.66	-2.2
1,457,616	+		Sama_1189	0.66	-2.1
1,457,800	+		Sama_1189	0.76	-3.3
1,457,818	+		Sama_1189	0.77	-2.4
1,457,818	+		Sama_1189	0.77	-2.4
1,457,867	+		Sama_1189	0.80	-2.3
1,457,867	+		Sama_1189	0.80	-3.1
1,457,867	+		Sama_1189	0.80	-0.9
1,457,867	+		Sama_1189	0.80	+0.2
1,457,867	+		Sama_1189	0.80	-1.9
1,457,867	+		Sama_1189	0.80	-2.2
1,457,867	+		Sama_1189	0.80	-2.6
1,457,867	+		Sama_1189	0.80	-2.3
1,457,868	-		Sama_1189	0.80	-1.6
1,457,868	-		Sama_1189	0.80	-3.0
1,457,868	-		Sama_1189	0.80	-1.6
1,457,903	+		Sama_1189	0.82	-0.7
1,457,907	+		Sama_1189	0.83	-3.4
1,457,907	+		Sama_1189	0.83	-2.6
1,457,907	+		Sama_1189	0.83	-2.4
1,457,907	+		Sama_1189	0.83	-2.6
1,457,907	+		Sama_1189	0.83	-2.7
1,457,908	-		Sama_1189	0.83	-1.2
1,457,908	-		Sama_1189	0.83	-1.6
1,457,956	+		Sama_1189	0.85	-2.1
1,458,002	+		Sama_1189	0.88	-1.4
1,458,002	+		Sama_1189	0.88	-3.9
1,458,003	-		Sama_1189	0.88	+0.2
1,458,003	-		Sama_1189	0.88	-1.8
1,458,057	+				-1.6
1,458,058	-				-1.6
1,458,059	+				-2.7
1,458,059	+				-1.9
1,458,059	+				-2.3
1,458,059	+				-2.9
1,458,059	+				+0.3
1,458,060	-				-1.5
1,458,060	-				-2.1
1,458,060	-				-1.4
1,458,060	-				+2.4
1,458,060	-				-2.1
1,458,060	-				-0.8
1,458,060	-				-1.9
1,458,089	+				-1.8
1,458,089	+				-1.4
1,458,089	+				-3.6
1,458,090	-				-0.4
1,458,097	+				-1.8
1,458,100	+				-1.9
1,458,100	+				-1.9
1,458,100	+				-2.0
1,458,100	+				-2.4
1,458,100	+				-2.1
1,458,100	+				-2.4
1,458,101	-				-1.5
1,458,101	-				-1.0
1,458,101	-				-3.3
1,458,110	+				-2.0
1,458,110	+				-2.3
1,458,111	-				-1.0
1,458,111	-				-2.0
1,458,130	-				-1.6
1,458,136	-				-2.8
1,458,136	-				-1.1
1,458,136	-				-3.5
1,458,312	-				-1.9
1,458,312	-				-0.2
1,458,327	+				-0.5
1,458,328	-				-0.9
1,458,332	-				-0.3
1,458,352	+				-0.9
1,458,353	-				+0.2
1,458,406	+		Sama_1190	0.12	-1.3
1,458,406	+		Sama_1190	0.12	-0.2
1,458,407	-		Sama_1190	0.12	-1.8
1,458,407	-		Sama_1190	0.12	-1.2
1,458,428	+		Sama_1190	0.18	-0.5
1,458,428	+		Sama_1190	0.18	+0.4
1,458,428	+		Sama_1190	0.18	-3.0
1,458,429	-		Sama_1190	0.18	-0.5
1,458,429	-		Sama_1190	0.18	+1.2
1,458,429	-		Sama_1190	0.18	+1.0
1,458,429	-		Sama_1190	0.18	+1.4
1,458,483	-		Sama_1190	0.32	+1.3
1,458,575	+		Sama_1190	0.56	+0.9
1,458,575	+		Sama_1190	0.56	-0.4
1,458,575	+		Sama_1190	0.56	-0.5
1,458,593	-		Sama_1190	0.61	+2.8
1,458,681	-		Sama_1190	0.84	+0.8
1,458,681	-		Sama_1190	0.84	-0.9
1,458,684	+		Sama_1190	0.85	-0.1
1,458,684	+		Sama_1190	0.85	-0.2
1,458,684	+		Sama_1190	0.85	+0.6
1,458,685	-		Sama_1190	0.85	+0.6
1,458,685	-		Sama_1190	0.85	+1.3
1,458,685	-		Sama_1190	0.85	-0.2
1,458,685	-		Sama_1190	0.85	+0.3
1,458,753	+				-0.3
1,458,755	+				+0.6
1,458,755	+				+0.1
1,458,755	+				-0.0
1,458,767	+				-0.0
1,458,768	-				-0.3
1,458,799	+				+0.3
1,458,831	+				-2.1
1,458,831	+				-0.9
1,458,831	+				+1.1
1,458,832	-				+0.5
1,458,844	+				-0.9
1,458,845	-				-0.3
1,458,845	-				-0.3
1,458,885	+				+0.3
1,458,885	+				-1.5
1,458,953	+		Sama_1191	0.15	+0.1
1,458,954	-		Sama_1191	0.15	+1.7
1,459,016	+		Sama_1191	0.24	-0.0
1,459,017	-		Sama_1191	0.24	+0.7
1,459,151	-		Sama_1191	0.43	-0.3
1,459,184	-		Sama_1191	0.48	-1.3
1,459,353	-		Sama_1191	0.72	-0.4
1,459,353	-		Sama_1191	0.72	-0.3
1,459,429	+		Sama_1191	0.82	-0.1
1,459,430	-		Sama_1191	0.83	+1.9
1,459,468	+		Sama_1191	0.88	+0.3
1,459,560	-				-0.4
1,459,590	-				-0.3
1,459,654	+				-0.3
1,459,654	+				+0.0
1,459,655	-				+0.4
1,459,655	-				+0.6
1,459,655	-				+1.1
1,459,655	-				-0.4
1,459,655	-				+0.1
1,459,655	-				-0.1
1,459,681	+				-0.1
1,459,681	+				-0.2