Strain Fitness in Shewanella amazonensis SB2B around Sama_0984

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
1,188,273	-		Sama_0982	0.90	-0.7
1,188,296	+				+0.2
1,188,297	-				+0.3
1,188,297	-				+1.1
1,188,346	+				+0.7
1,188,352	+				-1.7
1,188,353	-				-1.0
1,188,353	-				-0.1
1,188,364	+				+0.5
1,188,365	-				-0.3
1,188,373	+				-0.1
1,188,393	+				+0.1
1,188,393	+				+0.5
1,188,393	+				+0.2
1,188,394	-				+0.6
1,188,403	-				-0.0
1,188,404	+				+0.5
1,188,410	-				+1.3
1,188,481	+				-1.1
1,188,481	+				-0.1
1,188,482	-				-0.1
1,188,483	+				-0.5
1,188,483	+				-0.4
1,188,483	+				+0.6
1,188,484	-				-1.6
1,188,484	-				-1.2
1,188,484	-				-1.6
1,188,511	-				+1.2
1,188,511	-				+0.5
1,188,522	+				-1.4
1,188,522	+				-2.3
1,188,522	+				+2.9
1,188,554	+				-0.4
1,188,577	-				+1.2
1,188,577	-				-0.6
1,188,665	+		Sama_0983	0.21	+0.5
1,188,666	-		Sama_0983	0.21	-0.2
1,188,666	-		Sama_0983	0.21	+2.8
1,188,776	+		Sama_0983	0.37	-0.7
1,188,776	+		Sama_0983	0.37	+0.1
1,188,777	-		Sama_0983	0.37	+0.3
1,188,777	-		Sama_0983	0.37	-1.5
1,188,777	-		Sama_0983	0.37	-0.4
1,188,810	+		Sama_0983	0.41	-0.3
1,188,810	+		Sama_0983	0.41	-0.3
1,188,810	+		Sama_0983	0.41	+0.1
1,188,810	+		Sama_0983	0.41	+0.6
1,188,810	+		Sama_0983	0.41	-0.1
1,188,811	-		Sama_0983	0.41	-0.0
1,188,811	-		Sama_0983	0.41	-0.3
1,188,811	-		Sama_0983	0.41	-1.8
1,188,811	-		Sama_0983	0.41	-0.7
1,188,833	+		Sama_0983	0.45	-1.0
1,188,872	+		Sama_0983	0.50	-0.2
1,188,908	-		Sama_0983	0.55	+1.7
1,188,951	+		Sama_0983	0.61	+0.4
1,188,951	+		Sama_0983	0.61	+1.0
1,188,951	+		Sama_0983	0.61	+1.0
1,188,951	+		Sama_0983	0.61	+0.1
1,188,951	+		Sama_0983	0.61	+0.3
1,188,951	+		Sama_0983	0.61	-1.6
1,188,951	+		Sama_0983	0.61	+1.6
1,188,952	-		Sama_0983	0.61	-0.7
1,188,952	-		Sama_0983	0.61	+0.2
1,188,952	-		Sama_0983	0.61	+0.3
1,188,952	-		Sama_0983	0.61	-2.0
1,188,952	-		Sama_0983	0.61	-1.4
1,188,952	-		Sama_0983	0.61	+1.1
1,188,952	-		Sama_0983	0.61	+0.5
1,189,078	+		Sama_0983	0.79	-0.5
1,189,078	+		Sama_0983	0.79	-0.8
1,189,079	-		Sama_0983	0.79	-2.9
1,189,079	-		Sama_0983	0.79	+0.0
1,189,079	-		Sama_0983	0.79	+0.2
1,189,121	+		Sama_0983	0.85	+1.6
1,189,121	+		Sama_0983	0.85	+2.4
1,189,121	+		Sama_0983	0.85	+2.2
1,189,126	+		Sama_0983	0.86	-0.7
1,189,126	+		Sama_0983	0.86	+0.2
1,189,127	-		Sama_0983	0.86	-1.4
1,189,154	+		Sama_0983	0.90	-0.4
1,189,197	+				-1.7
1,189,198	-				-1.1
1,189,198	-				-1.0
1,189,224	+				+0.6
1,189,224	+				+1.2
1,189,321	+		Sama_0984	0.10	-0.2
1,189,321	+		Sama_0984	0.10	+0.1
1,189,321	+		Sama_0984	0.10	-0.5
1,189,321	+		Sama_0984	0.10	-1.7
1,189,321	+		Sama_0984	0.10	-0.4
1,189,321	+		Sama_0984	0.10	+0.2
1,189,321	+		Sama_0984	0.10	+0.9
1,189,322	-		Sama_0984	0.10	+0.0
1,189,322	-		Sama_0984	0.10	-0.3
1,189,322	-		Sama_0984	0.10	+0.1
1,189,322	-		Sama_0984	0.10	-0.2
1,189,323	+		Sama_0984	0.10	-1.8
1,189,357	+		Sama_0984	0.14	+0.6
1,189,390	+		Sama_0984	0.17	+2.5
1,189,390	+		Sama_0984	0.17	-0.4
1,189,390	+		Sama_0984	0.17	-2.0
1,189,461	-		Sama_0984	0.24	-0.9
1,189,461	-		Sama_0984	0.24	+0.3
1,189,461	-		Sama_0984	0.24	-1.0
1,189,475	-		Sama_0984	0.25	-0.1
1,189,475	-		Sama_0984	0.25	-1.3
1,189,475	-		Sama_0984	0.25	-0.1
1,189,477	+		Sama_0984	0.25	-0.2
1,189,477	+		Sama_0984	0.25	-2.0
1,189,478	-		Sama_0984	0.25	+0.8
1,189,478	-		Sama_0984	0.25	+0.3
1,189,478	-		Sama_0984	0.25	-1.6
1,189,484	+		Sama_0984	0.26	+0.5
1,189,635	+		Sama_0984	0.40	-0.1
1,189,636	-		Sama_0984	0.40	-1.5
1,189,666	+		Sama_0984	0.43	+0.1
1,189,666	+		Sama_0984	0.43	+0.4
1,189,667	-		Sama_0984	0.43	-1.0
1,189,785	-		Sama_0984	0.55	-0.9
1,189,846	+		Sama_0984	0.61	-1.4
1,189,846	+		Sama_0984	0.61	-0.5
1,189,846	+		Sama_0984	0.61	+1.9
1,189,854	+		Sama_0984	0.61	+0.1
1,189,854	+		Sama_0984	0.61	-0.1
1,189,854	+		Sama_0984	0.61	-1.1
1,189,855	-		Sama_0984	0.62	+0.1
1,189,855	-		Sama_0984	0.62	-0.1
1,189,855	-		Sama_0984	0.62	-0.0
1,189,855	-		Sama_0984	0.62	-0.9
1,189,858	-		Sama_0984	0.62	+2.0
1,189,858	-		Sama_0984	0.62	+0.3
1,190,036	+		Sama_0984	0.79	+0.4
1,190,036	+		Sama_0984	0.79	-0.1
1,190,036	+		Sama_0984	0.79	-0.0
1,190,037	-		Sama_0984	0.79	+1.2
1,190,037	-		Sama_0984	0.79	-1.5
1,190,037	-		Sama_0984	0.79	-1.7
1,190,037	-		Sama_0984	0.79	-0.5
1,190,041	-		Sama_0984	0.79	-2.0
1,190,041	-		Sama_0984	0.79	+0.2
1,190,041	-		Sama_0984	0.79	-1.2
1,190,041	-		Sama_0984	0.79	-1.2
1,190,041	-		Sama_0984	0.79	-0.1
1,190,041	-		Sama_0984	0.79	-0.1
1,190,041	-		Sama_0984	0.79	-0.7
1,190,054	+		Sama_0984	0.81	+0.3
1,190,055	-		Sama_0984	0.81	-2.0
1,190,065	+		Sama_0984	0.82	-0.7
1,190,065	+		Sama_0984	0.82	+1.0
1,190,065	+		Sama_0984	0.82	-0.4
1,190,065	+		Sama_0984	0.82	-0.2
1,190,066	-		Sama_0984	0.82	-0.4
1,190,066	-		Sama_0984	0.82	-1.0
1,190,066	-		Sama_0984	0.82	-1.8
1,190,066	-		Sama_0984	0.82	+0.4
1,190,075	-		Sama_0984	0.83	+0.9
1,190,080	+		Sama_0984	0.83	-0.1
1,190,081	-		Sama_0984	0.83	+1.4
1,190,081	-		Sama_0984	0.83	+0.3
1,190,081	-		Sama_0984	0.83	+0.3
1,190,100	+		Sama_0984	0.85	+3.3
1,190,100	+		Sama_0984	0.85	-0.8
1,190,100	+		Sama_0984	0.85	-0.6
1,190,100	+		Sama_0984	0.85	+0.2
1,190,101	-		Sama_0984	0.85	-0.7
1,190,101	-		Sama_0984	0.85	-0.1
1,190,101	-		Sama_0984	0.85	+0.0
1,190,101	-		Sama_0984	0.85	-0.9
1,190,101	-		Sama_0984	0.85	-0.0
1,190,101	-		Sama_0984	0.85	-0.5
1,190,101	-		Sama_0984	0.85	-0.3
1,190,101	-		Sama_0984	0.85	-0.5
1,190,101	-		Sama_0984	0.85	+0.0
1,190,150	-				+1.0
1,190,227	+				-0.6
1,190,227	+				+0.4
1,190,227	+				+0.5
1,190,228	-				+2.3
1,190,228	-				+2.1
1,190,245	+				+0.1
1,190,245	+				+1.9
1,190,245	+				+2.8
1,190,245	+				-1.5
1,190,245	+				+0.8
1,190,246	-				-1.2
1,190,246	-				-0.4
1,190,246	-				+2.3
1,190,246	-				+0.3
1,190,246	-				-0.4
1,190,267	+				-0.0
1,190,267	+				-1.2
1,190,267	+				+0.1
1,190,268	-				-1.1
1,190,290	-				-0.6
1,190,290	-				+0.1
1,190,290	-				-2.0
1,190,296	+				-1.3
1,190,296	+				+0.1
1,190,296	+				+0.7
1,190,296	+				-0.9
1,190,296	+				+1.7
1,190,296	+				-0.8
1,190,297	-				+2.9
1,190,297	-				-0.8
1,190,297	-				+0.6
1,190,297	-				+3.0
1,190,297	-				-0.5
1,190,297	-				-0.4
1,190,297	-				-0.1
1,190,298	+				-0.4
1,190,298	+				-1.0
1,190,298	+				-0.1
1,190,298	+				+1.5
1,190,298	+				-0.6
1,190,298	+				+0.6
1,190,298	+				+1.0
1,190,298	+				+0.2
1,190,298	+				-2.3
1,190,298	+				-1.5
1,190,299	-				+0.4
1,190,299	-				+0.6
1,190,299	-				-1.4
1,190,299	-				-0.5
1,190,299	-				+4.0
1,190,299	-				-2.7
1,190,299	-				+2.3
1,190,299	-				-2.1
1,190,299	-				+1.6
1,190,299	-				+0.5
1,190,371	-				-2.1
1,190,371	-				+2.5
1,190,428	-				-2.8
1,190,443	+				-1.9
1,190,443	+				-0.0
1,190,443	+				-1.0
1,190,443	+				+0.7
1,190,443	+				-0.2
1,190,444	-				-0.4
1,190,444	-				+0.1
1,190,444	-				-2.6
1,190,444	-				-1.0
1,190,444	-				-1.8
1,190,444	-				-0.2
1,190,444	-				+0.2
1,190,444	-				+0.4
1,190,463	+				+0.1
1,190,493	+				-0.8
1,190,493	+				-0.1
1,190,494	-				-1.1
1,190,494	-				+1.2
1,190,494	-				+1.8
1,190,565	+				-0.9
1,190,566	-				+0.2
1,190,566	-				-0.4
1,190,637	+		Sama_0985	0.11	+1.1
1,190,637	+		Sama_0985	0.11	-2.2
1,190,637	+		Sama_0985	0.11	-0.7
1,190,637	+		Sama_0985	0.11	-0.0
1,190,638	-		Sama_0985	0.11	-1.4
1,190,638	-		Sama_0985	0.11	+0.5
1,190,638	-		Sama_0985	0.11	-0.4
1,190,642	-		Sama_0985	0.11	+1.2
1,190,806	-		Sama_0985	0.17	+0.6
1,190,913	+		Sama_0985	0.21	-0.7
1,190,913	+		Sama_0985	0.21	-0.4
1,190,913	+		Sama_0985	0.21	-1.5
1,190,914	-		Sama_0985	0.21	-0.4
1,190,914	-		Sama_0985	0.21	-0.0
1,190,929	+		Sama_0985	0.21	+1.6
1,191,031	+		Sama_0985	0.25	-1.0
1,191,065	+		Sama_0985	0.26	+0.2
1,191,085	+		Sama_0985	0.27	-2.3
1,191,085	+		Sama_0985	0.27	-1.2
1,191,085	+		Sama_0985	0.27	+0.9
1,191,086	-		Sama_0985	0.27	+0.3
1,191,181	-		Sama_0985	0.30	+0.5
1,191,242	-		Sama_0985	0.32	-0.2
1,191,242	-		Sama_0985	0.32	+2.0