Strain Fitness in Shewanella amazonensis SB2B around Sama_0841

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
1,024,791	-		Sama_0840	0.21	+3.2
1,024,791	-		Sama_0840	0.21	+2.9
1,024,791	-		Sama_0840	0.21	+1.9
1,024,800	-		Sama_0840	0.22	+3.5
1,024,800	-		Sama_0840	0.22	+3.5
1,024,901	-		Sama_0840	0.32	+3.1
1,024,956	-		Sama_0840	0.37	+3.3
1,025,024	+		Sama_0840	0.44	+1.2
1,025,070	+		Sama_0840	0.49	-0.8
1,025,071	-		Sama_0840	0.49	+3.9
1,025,071	-		Sama_0840	0.49	+2.9
1,025,071	-		Sama_0840	0.49	+2.7
1,025,087	+		Sama_0840	0.50	+5.0
1,025,124	-		Sama_0840	0.54	+2.0
1,025,130	-		Sama_0840	0.54	+3.1
1,025,293	+		Sama_0840	0.70	+2.7
1,025,294	-		Sama_0840	0.70	+4.0
1,025,294	-		Sama_0840	0.70	+3.5
1,025,294	-		Sama_0840	0.70	+4.2
1,025,294	-		Sama_0840	0.70	+2.5
1,025,454	+		Sama_0840	0.86	+3.7
1,025,455	-		Sama_0840	0.86	+3.7
1,025,498	-				+3.1
1,025,507	+				+2.9
1,025,508	-				+3.1
1,025,528	+				+3.9
1,025,529	-				+3.2
1,025,560	-				+2.8
1,025,654	+				+2.8
1,025,655	-				+0.5
1,025,655	-				-0.8
1,025,655	-				-0.5
1,025,658	+				+3.7
1,025,659	-				-0.3
1,025,659	-				-1.5
1,025,680	+				+3.1
1,025,680	+				+4.5
1,025,680	+				+3.1
1,025,681	-				+0.7
1,025,681	-				-2.0
1,025,681	-				-0.8
1,025,681	-				-0.5
1,025,681	-				+0.2
1,025,683	-				+3.5
1,025,683	-				-1.9
1,025,683	-				-0.5
1,025,718	-				-0.6
1,025,723	-				+0.7
1,025,765	+				+1.1
1,025,765	+				-2.3
1,025,804	-				-1.5
1,025,814	+				-0.8
1,025,815	-				-0.7
1,025,856	+				-2.6
1,025,856	+				-0.0
1,025,857	-				-1.6
1,025,857	-				-1.3
1,025,857	-				-2.4
1,025,909	+		Sama_0841	0.10	+0.7
1,025,909	+		Sama_0841	0.10	-2.2
1,025,910	-		Sama_0841	0.10	-1.9
1,025,910	-		Sama_0841	0.10	-1.0
1,025,910	-		Sama_0841	0.10	-2.9
1,025,910	-		Sama_0841	0.10	-2.7
1,026,117	+		Sama_0841	0.22	-3.4
1,026,117	+		Sama_0841	0.22	-1.3
1,026,117	+		Sama_0841	0.22	-3.8
1,026,118	-		Sama_0841	0.22	-0.2
1,026,118	-		Sama_0841	0.22	-0.0
1,026,118	-		Sama_0841	0.22	-3.2
1,026,177	+		Sama_0841	0.26	-2.0
1,026,177	+		Sama_0841	0.26	-2.0
1,026,178	-		Sama_0841	0.26	-1.8
1,026,224	-		Sama_0841	0.28	-1.6
1,026,224	-		Sama_0841	0.28	-1.5
1,026,241	+		Sama_0841	0.29	-1.1
1,026,241	+		Sama_0841	0.29	-1.5
1,026,242	-		Sama_0841	0.30	-2.1
1,026,242	-		Sama_0841	0.30	-1.7
1,026,242	-		Sama_0841	0.30	-1.4
1,026,314	+		Sama_0841	0.34	-0.7
1,026,314	+		Sama_0841	0.34	-2.1
1,026,315	-		Sama_0841	0.34	-2.2
1,026,315	-		Sama_0841	0.34	+0.6
1,026,315	-		Sama_0841	0.34	-2.6
1,026,322	-		Sama_0841	0.34	-1.1
1,026,322	-		Sama_0841	0.34	-3.0
1,026,333	+		Sama_0841	0.35	-1.8
1,026,333	+		Sama_0841	0.35	+1.5
1,026,333	+		Sama_0841	0.35	-2.1
1,026,333	+		Sama_0841	0.35	+0.1
1,026,334	-		Sama_0841	0.35	-2.8
1,026,334	-		Sama_0841	0.35	-1.1
1,026,334	-		Sama_0841	0.35	-3.1
1,026,334	-		Sama_0841	0.35	-0.5
1,026,368	-		Sama_0841	0.37	-2.3
1,026,368	-		Sama_0841	0.37	-1.2
1,026,379	+		Sama_0841	0.38	-2.1
1,026,405	+		Sama_0841	0.39	-0.9
1,026,418	+		Sama_0841	0.40	-1.0
1,026,455	-		Sama_0841	0.42	-2.5
1,026,518	-		Sama_0841	0.46	-2.1
1,026,581	-		Sama_0841	0.49	-1.9
1,026,581	-		Sama_0841	0.49	-0.6
1,026,586	+		Sama_0841	0.50	-0.9
1,026,586	+		Sama_0841	0.50	-2.3
1,026,612	-		Sama_0841	0.51	-2.1
1,026,614	+		Sama_0841	0.51	-1.0
1,026,614	+		Sama_0841	0.51	-2.4
1,026,661	+		Sama_0841	0.54	-3.0
1,026,662	-		Sama_0841	0.54	-1.4
1,026,662	-		Sama_0841	0.54	-2.0
1,026,715	-		Sama_0841	0.57	-1.8
1,026,754	-		Sama_0841	0.59	-1.1
1,026,754	-		Sama_0841	0.59	-2.3
1,026,773	+		Sama_0841	0.60	-2.1
1,026,817	+		Sama_0841	0.63	-1.1
1,026,828	+		Sama_0841	0.64	-1.4
1,026,828	+		Sama_0841	0.64	-0.4
1,026,829	-		Sama_0841	0.64	-1.8
1,026,864	-		Sama_0841	0.66	-0.3
1,026,864	-		Sama_0841	0.66	-0.9
1,026,869	+		Sama_0841	0.66	-2.1
1,026,870	-		Sama_0841	0.66	-1.5
1,026,870	-		Sama_0841	0.66	-2.1
1,026,870	-		Sama_0841	0.66	-2.2
1,026,870	-		Sama_0841	0.66	-1.9
1,026,870	-		Sama_0841	0.66	-1.2
1,026,870	-		Sama_0841	0.66	-1.9
1,026,918	-		Sama_0841	0.69	-1.2
1,026,946	+		Sama_0841	0.71	-0.4
1,026,946	+		Sama_0841	0.71	-1.2
1,026,946	+		Sama_0841	0.71	-1.2
1,026,946	+		Sama_0841	0.71	-1.7
1,026,946	+		Sama_0841	0.71	-2.1
1,026,947	-		Sama_0841	0.71	-1.7
1,026,947	-		Sama_0841	0.71	-3.0
1,026,947	-		Sama_0841	0.71	-0.6
1,026,947	-		Sama_0841	0.71	-2.2
1,026,947	-		Sama_0841	0.71	-0.6
1,026,949	+		Sama_0841	0.71	-2.3
1,027,111	+		Sama_0841	0.80	-2.5
1,027,128	+		Sama_0841	0.81	-2.1
1,027,128	+		Sama_0841	0.81	+0.1
1,027,128	+		Sama_0841	0.81	-0.6
1,027,129	-		Sama_0841	0.81	-2.4
1,027,129	-		Sama_0841	0.81	-1.4
1,027,129	-		Sama_0841	0.81	-0.9
1,027,129	-		Sama_0841	0.81	-1.6
1,027,224	+		Sama_0841	0.87	-2.1
1,027,224	+		Sama_0841	0.87	-1.8
1,027,225	-		Sama_0841	0.87	-1.2
1,027,225	-		Sama_0841	0.87	-0.1
1,027,225	-		Sama_0841	0.87	-2.4
1,027,225	-		Sama_0841	0.87	+2.8
1,027,246	+		Sama_0841	0.88	-1.4
1,027,246	+		Sama_0841	0.88	-1.8
1,027,246	+		Sama_0841	0.88	-1.0
1,027,246	+		Sama_0841	0.88	+0.1
1,027,246	+		Sama_0841	0.88	-0.2
1,027,246	+		Sama_0841	0.88	-1.0
1,027,247	-		Sama_0841	0.88	-2.3
1,027,247	-		Sama_0841	0.88	-0.4
1,027,247	-		Sama_0841	0.88	-0.7
1,027,247	-		Sama_0841	0.88	-1.6
1,027,247	-		Sama_0841	0.88	-1.2
1,027,247	-		Sama_0841	0.88	-0.9
1,027,263	+		Sama_0841	0.89	-1.8
1,027,263	+		Sama_0841	0.89	-2.3
1,027,263	+		Sama_0841	0.89	+1.1
1,027,287	-				-1.8
1,027,300	+				+1.0
1,027,301	-				-3.3
1,027,402	-				+0.2
1,027,443	-				-1.6
1,027,443	-				-0.5
1,027,443	-				-1.3
1,027,443	-				-0.0
1,027,465	+				-0.5
1,027,465	+				+0.3
1,027,466	-				+1.6
1,027,466	-				-2.4
1,027,466	-				-1.7
1,027,496	+				-2.3
1,027,496	+				-1.4
1,027,496	+				-0.0
1,027,496	+				-1.5
1,027,496	+				-2.9
1,027,496	+				-2.7
1,027,496	+				-2.7
1,027,496	+				-0.9
1,027,496	+				+1.4
1,027,496	+				-1.9
1,027,496	+				-1.3
1,027,497	-				-0.3
1,027,497	-				-0.9
1,027,497	-				+1.5
1,027,497	-				-1.4
1,027,497	-				+0.3
1,027,497	-				-0.4
1,027,504	+				-3.7
1,027,504	+				-0.6
1,027,505	-				-3.1
1,027,541	-				+1.8
1,027,543	+				-0.3
1,027,543	+				+1.9
1,027,543	+				-1.8
1,027,543	+				-1.0
1,027,544	-				-0.9
1,027,544	-				+1.4
1,027,544	-				+0.7
1,027,570	-				+1.1
1,027,629	+				-0.5
1,027,673	+		Sama_0842	0.14	+3.3
1,027,673	+		Sama_0842	0.14	+0.9
1,027,674	-		Sama_0842	0.14	-0.3
1,027,674	-		Sama_0842	0.14	+3.5
1,027,674	-		Sama_0842	0.14	+0.0
1,027,674	-		Sama_0842	0.14	+0.4
1,027,674	-		Sama_0842	0.14	-1.8
1,027,674	-		Sama_0842	0.14	-1.2
1,027,677	+		Sama_0842	0.15	-1.6
1,027,678	-		Sama_0842	0.15	+1.0
1,027,678	-		Sama_0842	0.15	+0.7
1,027,928	+		Sama_0842	0.46	-0.8
1,028,042	-		Sama_0842	0.60	+0.5
1,028,197	+		Sama_0842	0.79	+1.2
1,028,197	+		Sama_0842	0.79	+0.9
1,028,197	+		Sama_0842	0.79	+0.6
1,028,197	+		Sama_0842	0.79	+1.8
1,028,197	+		Sama_0842	0.79	-0.9
1,028,197	+		Sama_0842	0.79	+0.9
1,028,197	+		Sama_0842	0.79	+0.7
1,028,198	-		Sama_0842	0.79	+1.2
1,028,198	-		Sama_0842	0.79	+0.4
1,028,198	-		Sama_0842	0.79	-1.1
1,028,198	-		Sama_0842	0.79	-1.9
1,028,198	-		Sama_0842	0.79	-0.4
1,028,217	+		Sama_0842	0.82	-0.3
1,028,217	+		Sama_0842	0.82	-1.6
1,028,217	+		Sama_0842	0.82	-1.3
1,028,218	-		Sama_0842	0.82	-0.5
1,028,218	-		Sama_0842	0.82	+0.8
1,028,219	+		Sama_0842	0.82	+0.4
1,028,219	+		Sama_0842	0.82	-0.9
1,028,219	+		Sama_0842	0.82	+0.5
1,028,220	-		Sama_0842	0.82	+1.3
1,028,220	-		Sama_0842	0.82	+0.1
1,028,293	+				-0.9
1,028,293	+				+1.2
1,028,294	-				-0.9
1,028,294	-				-0.6
1,028,314	+				+1.2