Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0680 and Sama_0681 are separated by 156 nucleotides Sama_0681 and Sama_0682 are separated by 133 nucleotides Sama_0682 and Sama_0683 are separated by 52 nucleotides Sama_0683 and Sama_0684 are separated by 86 nucleotides
Sama_0680: Sama_0680 - XRE family transcriptional regulator (RefSeq), at 841,258 to 842,772
_0680
Sama_0681: Sama_0681 - malate synthase (RefSeq), at 842,929 to 843,501
_0681
Sama_0682: Sama_0682 - putative glutathione S-transferase (RefSeq), at 843,635 to 844,309
_0682
Sama_0683: Sama_0683 - hypothetical protein (RefSeq), at 844,362 to 844,652
_0683
Sama_0684: Sama_0684 - aminopeptidase P, putative (RefSeq), at 844,739 to 846,538
_0684
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 842.662 kb on + strand at 842.662 kb on + strand at 842.662 kb on + strand at 842.663 kb on - strand at 842.663 kb on - strand at 842.663 kb on - strand at 842.663 kb on - strand at 842.692 kb on + strand at 842.692 kb on + strand at 842.693 kb on - strand at 842.693 kb on - strand at 842.693 kb on - strand at 842.908 kb on + strand at 842.908 kb on + strand at 842.908 kb on + strand at 842.908 kb on + strand at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.103 kb on + strand, within Sama_0681 at 843.103 kb on + strand, within Sama_0681 at 843.104 kb on - strand, within Sama_0681 at 843.104 kb on - strand, within Sama_0681 at 843.104 kb on - strand, within Sama_0681 at 843.112 kb on + strand, within Sama_0681 at 843.112 kb on + strand, within Sama_0681 at 843.112 kb on + strand, within Sama_0681 at 843.115 kb on + strand, within Sama_0681 at 843.238 kb on - strand, within Sama_0681 at 843.251 kb on + strand, within Sama_0681 at 843.473 kb on - strand at 843.500 kb on - strand at 843.500 kb on - strand at 843.500 kb on - strand at 843.500 kb on - strand at 843.534 kb on - strand at 843.538 kb on - strand at 843.538 kb on - strand at 843.590 kb on + strand at 843.591 kb on - strand at 843.591 kb on - strand at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.775 kb on - strand, within Sama_0682 at 843.775 kb on - strand, within Sama_0682 at 843.775 kb on - strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.815 kb on + strand, within Sama_0682 at 843.820 kb on + strand, within Sama_0682 at 843.820 kb on + strand, within Sama_0682 at 843.821 kb on - strand, within Sama_0682 at 843.829 kb on + strand, within Sama_0682 at 843.829 kb on + strand, within Sama_0682 at 843.895 kb on + strand, within Sama_0682 at 843.896 kb on - strand, within Sama_0682 at 843.968 kb on - strand, within Sama_0682 at 843.998 kb on - strand, within Sama_0682 at 844.007 kb on - strand, within Sama_0682 at 844.007 kb on - strand, within Sama_0682 at 844.051 kb on - strand, within Sama_0682 at 844.089 kb on + strand, within Sama_0682 at 844.089 kb on + strand, within Sama_0682 at 844.090 kb on - strand, within Sama_0682 at 844.104 kb on + strand, within Sama_0682 at 844.104 kb on + strand, within Sama_0682 at 844.105 kb on - strand, within Sama_0682 at 844.278 kb on + strand at 844.278 kb on + strand at 844.286 kb on - strand at 844.296 kb on + strand at 844.296 kb on + strand at 844.296 kb on + strand at 844.296 kb on + strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.329 kb on + strand at 844.329 kb on + strand at 844.330 kb on - strand at 844.335 kb on + strand at 844.335 kb on + strand at 844.336 kb on - strand at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.481 kb on + strand, within Sama_0683 at 844.502 kb on - strand, within Sama_0683 at 844.502 kb on - strand, within Sama_0683 at 844.558 kb on + strand, within Sama_0683 at 844.558 kb on + strand, within Sama_0683 at 844.558 kb on + strand, within Sama_0683 at 844.559 kb on - strand, within Sama_0683 at 844.559 kb on - strand, within Sama_0683 at 844.559 kb on - strand, within Sama_0683 at 844.603 kb on + strand, within Sama_0683 at 844.652 kb on + strand at 844.652 kb on + strand at 844.653 kb on - strand at 844.710 kb on - strand at 844.712 kb on + strand at 844.713 kb on - strand at 844.713 kb on - strand at 844.713 kb on - strand at 844.744 kb on + strand at 844.744 kb on + strand at 844.744 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.810 kb on - strand at 844.810 kb on - strand at 844.810 kb on - strand at 844.810 kb on - strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.812 kb on - strand at 844.812 kb on - strand at 844.812 kb on - strand at 844.812 kb on - strand at 844.917 kb on + strand at 844.918 kb on - strand at 845.004 kb on + strand, within Sama_0684 at 845.008 kb on - strand, within Sama_0684 at 845.008 kb on - strand, within Sama_0684 at 845.008 kb on - strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.122 kb on + strand, within Sama_0684 at 845.122 kb on + strand, within Sama_0684 at 845.122 kb on + strand, within Sama_0684 at 845.134 kb on - strand, within Sama_0684 at 845.158 kb on - strand, within Sama_0684 at 845.158 kb on - strand, within Sama_0684 at 845.227 kb on + strand, within Sama_0684 at 845.285 kb on - strand, within Sama_0684
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 842,662 + -0.4 842,662 + -0.6 842,662 + -1.0 842,663 - +0.2 842,663 - -1.7 842,663 - +0.5 842,663 - +0.3 842,692 + +0.0 842,692 + -0.3 842,693 - +0.9 842,693 - -0.4 842,693 - -1.6 842,908 + -0.0 842,908 + +1.5 842,908 + -0.8 842,908 + -0.2 843,087 + Sama_0681 0.28 -1.6 843,087 + Sama_0681 0.28 -0.7 843,087 + Sama_0681 0.28 +0.2 843,087 + Sama_0681 0.28 +0.5 843,087 + Sama_0681 0.28 -0.3 843,087 + Sama_0681 0.28 -0.4 843,088 - Sama_0681 0.28 -1.4 843,088 - Sama_0681 0.28 +0.4 843,088 - Sama_0681 0.28 +0.8 843,088 - Sama_0681 0.28 -0.6 843,088 - Sama_0681 0.28 -1.4 843,088 - Sama_0681 0.28 +1.0 843,088 - Sama_0681 0.28 +2.8 843,088 - Sama_0681 0.28 +0.7 843,088 - Sama_0681 0.28 +1.0 843,103 + Sama_0681 0.30 -0.8 843,103 + Sama_0681 0.30 -0.2 843,104 - Sama_0681 0.31 -0.4 843,104 - Sama_0681 0.31 +1.7 843,104 - Sama_0681 0.31 -1.4 843,112 + Sama_0681 0.32 -2.5 843,112 + Sama_0681 0.32 +1.1 843,112 + Sama_0681 0.32 -0.4 843,115 + Sama_0681 0.32 +1.2 843,238 - Sama_0681 0.54 +0.4 843,251 + Sama_0681 0.56 +0.4 843,473 - -0.7 843,500 - +0.9 843,500 - -0.6 843,500 - +2.2 843,500 - -0.4 843,534 - +0.6 843,538 - -1.6 843,538 - -1.1 843,590 + +0.3 843,591 - +1.9 843,591 - +0.1 843,774 + Sama_0682 0.21 -0.2 843,774 + Sama_0682 0.21 +1.1 843,774 + Sama_0682 0.21 +2.5 843,774 + Sama_0682 0.21 +2.3 843,774 + Sama_0682 0.21 +2.9 843,774 + Sama_0682 0.21 +0.0 843,775 - Sama_0682 0.21 +2.0 843,775 - Sama_0682 0.21 +0.2 843,775 - Sama_0682 0.21 +0.4 843,807 + Sama_0682 0.25 +1.0 843,807 + Sama_0682 0.25 -0.1 843,807 + Sama_0682 0.25 -0.2 843,807 + Sama_0682 0.25 +0.1 843,807 + Sama_0682 0.25 -2.9 843,808 - Sama_0682 0.26 +1.6 843,808 - Sama_0682 0.26 +1.2 843,808 - Sama_0682 0.26 +0.2 843,808 - Sama_0682 0.26 -0.2 843,808 - Sama_0682 0.26 -0.9 843,815 + Sama_0682 0.27 -0.1 843,820 + Sama_0682 0.27 +1.9 843,820 + Sama_0682 0.27 +2.0 843,821 - Sama_0682 0.28 +0.2 843,829 + Sama_0682 0.29 +0.6 843,829 + Sama_0682 0.29 -1.9 843,895 + Sama_0682 0.39 +0.9 843,896 - Sama_0682 0.39 +0.0 843,968 - Sama_0682 0.49 -1.5 843,998 - Sama_0682 0.54 +0.3 844,007 - Sama_0682 0.55 -1.7 844,007 - Sama_0682 0.55 -0.3 844,051 - Sama_0682 0.62 +0.4 844,089 + Sama_0682 0.67 +0.2 844,089 + Sama_0682 0.67 -0.0 844,090 - Sama_0682 0.67 -2.2 844,104 + Sama_0682 0.69 -1.2 844,104 + Sama_0682 0.69 +0.1 844,105 - Sama_0682 0.70 -0.2 844,278 + -0.5 844,278 + +1.2 844,286 - -0.1 844,296 + +1.2 844,296 + +0.7 844,296 + +0.9 844,296 + +1.0 844,297 - -0.3 844,297 - -0.4 844,297 - -0.6 844,297 - +0.5 844,297 - +0.3 844,329 + +0.2 844,329 + +1.9 844,330 - -0.8 844,335 + -0.6 844,335 + +1.3 844,336 - -0.5 844,409 - Sama_0683 0.16 -1.7 844,409 - Sama_0683 0.16 -0.4 844,409 - Sama_0683 0.16 +0.6 844,409 - Sama_0683 0.16 -0.6 844,409 - Sama_0683 0.16 -0.5 844,481 + Sama_0683 0.41 -0.3 844,502 - Sama_0683 0.48 +1.7 844,502 - Sama_0683 0.48 +0.4 844,558 + Sama_0683 0.67 +0.6 844,558 + Sama_0683 0.67 +3.9 844,558 + Sama_0683 0.67 -0.5 844,559 - Sama_0683 0.68 -0.7 844,559 - Sama_0683 0.68 +2.3 844,559 - Sama_0683 0.68 +0.6 844,603 + Sama_0683 0.83 -0.7 844,652 + +1.1 844,652 + +4.3 844,653 - -1.0 844,710 - -0.5 844,712 + -0.7 844,713 - -0.9 844,713 - -0.2 844,713 - -0.7 844,744 + -0.4 844,744 + +0.7 844,744 + +0.1 844,809 + +0.7 844,809 + -1.6 844,809 + +0.5 844,809 + +0.2 844,809 + +0.2 844,810 - +1.3 844,810 - -0.6 844,810 - -0.1 844,810 - -1.4 844,811 + +1.0 844,811 + -0.5 844,811 + +1.7 844,811 + +0.2 844,811 + +1.3 844,811 + -0.2 844,811 + -0.6 844,812 - -1.3 844,812 - -1.0 844,812 - +1.2 844,812 - +0.4 844,917 + -0.7 844,918 - -1.3 845,004 + Sama_0684 0.15 -0.7 845,008 - Sama_0684 0.15 +1.2 845,008 - Sama_0684 0.15 -0.5 845,008 - Sama_0684 0.15 -1.1 845,090 + Sama_0684 0.20 -0.3 845,090 + Sama_0684 0.20 +1.3 845,090 + Sama_0684 0.20 -1.1 845,090 + Sama_0684 0.20 +1.2 845,091 - Sama_0684 0.20 -1.0 845,091 - Sama_0684 0.20 -0.4 845,091 - Sama_0684 0.20 -0.3 845,091 - Sama_0684 0.20 +1.8 845,091 - Sama_0684 0.20 +0.4 845,091 - Sama_0684 0.20 +0.6 845,091 - Sama_0684 0.20 -0.7 845,091 - Sama_0684 0.20 -0.4 845,122 + Sama_0684 0.21 +1.2 845,122 + Sama_0684 0.21 -1.2 845,122 + Sama_0684 0.21 -1.6 845,134 - Sama_0684 0.22 -1.1 845,158 - Sama_0684 0.23 +0.4 845,158 - Sama_0684 0.23 -2.2 845,227 + Sama_0684 0.27 -0.7 845,285 - Sama_0684 0.30 -2.0
Or see this region's nucleotide sequence