Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0547 and Sama_0548 are separated by 169 nucleotides Sama_0548 and Sama_0549 are separated by 96 nucleotides Sama_0549 and Sama_0550 are separated by 245 nucleotides
Sama_0547: Sama_0547 - sensor histidine kinase (RefSeq), at 673,156 to 674,799
_0547
Sama_0548: Sama_0548 - hypothetical protein (RefSeq), at 674,969 to 675,589
_0548
Sama_0549: Sama_0549 - hypothetical protein (RefSeq), at 675,686 to 675,814
_0549
Sama_0550: Sama_0550 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 676,060 to 677,616
_0550
Position (kb) 675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 674.718 kb on + strand at 674.806 kb on + strand at 674.806 kb on + strand at 674.807 kb on - strand at 674.810 kb on + strand at 674.810 kb on + strand at 674.811 kb on - strand at 674.831 kb on + strand at 674.831 kb on + strand at 674.831 kb on + strand at 674.832 kb on - strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.843 kb on + strand at 674.843 kb on + strand at 674.843 kb on + strand at 674.843 kb on + strand at 674.844 kb on - strand at 674.844 kb on - strand at 674.844 kb on - strand at 674.853 kb on - strand at 674.856 kb on - strand at 674.897 kb on + strand at 674.897 kb on + strand at 674.897 kb on + strand at 674.898 kb on - strand at 674.905 kb on - strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.925 kb on + strand at 674.925 kb on + strand at 674.926 kb on - strand at 675.026 kb on - strand at 675.048 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.136 kb on - strand, within Sama_0548 at 675.136 kb on - strand, within Sama_0548 at 675.141 kb on + strand, within Sama_0548 at 675.142 kb on - strand, within Sama_0548 at 675.206 kb on - strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.250 kb on + strand, within Sama_0548 at 675.251 kb on - strand, within Sama_0548 at 675.317 kb on - strand, within Sama_0548 at 675.334 kb on - strand, within Sama_0548 at 675.370 kb on + strand, within Sama_0548 at 675.371 kb on - strand, within Sama_0548 at 675.371 kb on - strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.428 kb on + strand, within Sama_0548 at 675.429 kb on - strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.508 kb on + strand, within Sama_0548 at 675.508 kb on + strand, within Sama_0548 at 675.509 kb on - strand, within Sama_0548 at 675.543 kb on + strand at 675.543 kb on + strand at 675.543 kb on + strand at 675.543 kb on + strand at 675.543 kb on + strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.547 kb on + strand at 675.547 kb on + strand at 675.547 kb on + strand at 675.548 kb on - strand at 675.555 kb on + strand at 675.556 kb on - strand at 675.614 kb on + strand at 675.614 kb on + strand at 675.615 kb on - strand at 675.665 kb on + strand at 675.665 kb on + strand at 675.688 kb on - strand at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.759 kb on - strand, within Sama_0549 at 675.759 kb on - strand, within Sama_0549 at 675.770 kb on + strand, within Sama_0549 at 675.771 kb on - strand, within Sama_0549 at 675.776 kb on + strand, within Sama_0549 at 675.784 kb on + strand, within Sama_0549 at 675.785 kb on - strand, within Sama_0549 at 675.852 kb on + strand at 675.852 kb on + strand at 675.853 kb on - strand at 675.853 kb on - strand at 675.853 kb on - strand at 675.890 kb on + strand at 675.890 kb on + strand at 675.891 kb on - strand at 675.907 kb on + strand at 675.908 kb on - strand at 675.914 kb on - strand at 675.914 kb on - strand at 675.979 kb on + strand at 675.979 kb on + strand at 675.979 kb on + strand at 675.980 kb on - strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.179 kb on + strand at 676.179 kb on + strand at 676.179 kb on + strand at 676.179 kb on + strand at 676.198 kb on - strand at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.426 kb on - strand, within Sama_0550 at 676.426 kb on - strand, within Sama_0550 at 676.455 kb on + strand, within Sama_0550 at 676.507 kb on - strand, within Sama_0550 at 676.507 kb on - strand, within Sama_0550 at 676.610 kb on - strand, within Sama_0550 at 676.724 kb on + strand, within Sama_0550 at 676.724 kb on + strand, within Sama_0550 at 676.724 kb on + strand, within Sama_0550 at 676.734 kb on + strand, within Sama_0550 at 676.734 kb on + strand, within Sama_0550 at 676.734 kb on + strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.743 kb on + strand, within Sama_0550 at 676.743 kb on + strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 674,718 + +0.7 674,806 + +1.6 674,806 + -0.1 674,807 - +0.0 674,810 + -1.1 674,810 + -1.0 674,811 - +1.4 674,831 + -0.1 674,831 + +1.4 674,831 + +0.5 674,832 - -0.2 674,835 + -0.1 674,835 + +0.4 674,835 + -1.2 674,835 + -1.1 674,835 + +0.8 674,835 + -0.6 674,835 + -1.0 674,835 + -0.2 674,835 + +0.4 674,835 + +0.7 674,835 + -0.9 674,835 + -0.4 674,835 + -0.5 674,835 + -2.0 674,835 + +1.0 674,835 + +0.0 674,835 + -0.7 674,835 + +0.2 674,835 + -2.7 674,835 + -0.1 674,835 + +1.5 674,835 + +1.1 674,835 + -0.5 674,835 + -1.4 674,835 + -1.4 674,835 + -1.9 674,835 + -1.5 674,835 + -0.3 674,835 + -0.6 674,835 + +2.3 674,835 + -0.5 674,835 + +0.6 674,836 - -1.2 674,836 - -0.2 674,836 - -0.7 674,836 - -2.9 674,836 - -0.9 674,836 - +1.1 674,836 - -0.3 674,836 - -0.2 674,836 - -0.6 674,836 - -0.4 674,836 - +2.4 674,836 - -0.7 674,836 - -0.9 674,836 - -0.1 674,836 - -0.4 674,836 - -0.6 674,836 - -0.7 674,836 - +0.3 674,836 - -0.3 674,836 - +5.0 674,836 - +1.2 674,836 - -0.3 674,836 - +0.1 674,836 - -1.1 674,836 - +2.0 674,836 - -0.7 674,836 - +1.9 674,836 - -0.0 674,836 - -0.0 674,836 - +0.1 674,837 + -0.3 674,837 + +0.9 674,837 + +0.1 674,837 + -1.0 674,837 + -1.0 674,837 + +0.7 674,837 + +2.1 674,837 + -0.7 674,838 - -0.6 674,838 - +0.4 674,838 - +0.9 674,838 - +0.4 674,838 - +0.2 674,838 - +0.5 674,838 - -2.7 674,838 - -0.8 674,843 + +0.1 674,843 + -2.1 674,843 + +1.7 674,843 + +0.7 674,844 - -1.2 674,844 - +0.4 674,844 - +0.6 674,853 - +0.1 674,856 - +0.9 674,897 + -0.2 674,897 + -0.4 674,897 + +0.5 674,898 - +0.1 674,905 - -0.7 674,917 + -0.9 674,917 + +0.1 674,917 + +0.7 674,925 + +2.1 674,925 + -0.3 674,926 - +0.3 675,026 - +0.4 675,048 + Sama_0548 0.13 -1.6 675,135 + Sama_0548 0.27 +0.8 675,135 + Sama_0548 0.27 +1.4 675,135 + Sama_0548 0.27 -0.2 675,135 + Sama_0548 0.27 +2.7 675,135 + Sama_0548 0.27 -2.1 675,135 + Sama_0548 0.27 +0.3 675,135 + Sama_0548 0.27 +0.4 675,135 + Sama_0548 0.27 -0.4 675,135 + Sama_0548 0.27 -1.9 675,135 + Sama_0548 0.27 +0.4 675,135 + Sama_0548 0.27 -0.9 675,136 - Sama_0548 0.27 -1.2 675,136 - Sama_0548 0.27 -1.5 675,141 + Sama_0548 0.28 -2.1 675,142 - Sama_0548 0.28 +0.7 675,206 - Sama_0548 0.38 -0.2 675,212 + Sama_0548 0.39 -2.3 675,212 + Sama_0548 0.39 -0.6 675,212 + Sama_0548 0.39 -0.5 675,212 + Sama_0548 0.39 -1.5 675,250 + Sama_0548 0.45 +1.4 675,251 - Sama_0548 0.45 -2.2 675,317 - Sama_0548 0.56 +0.8 675,334 - Sama_0548 0.59 +2.9 675,370 + Sama_0548 0.65 +0.8 675,371 - Sama_0548 0.65 -1.4 675,371 - Sama_0548 0.65 +0.4 675,401 + Sama_0548 0.70 +1.1 675,401 + Sama_0548 0.70 -0.0 675,401 + Sama_0548 0.70 +2.6 675,401 + Sama_0548 0.70 -0.8 675,428 + Sama_0548 0.74 +3.8 675,429 - Sama_0548 0.74 +1.9 675,435 + Sama_0548 0.75 +2.7 675,435 + Sama_0548 0.75 -0.5 675,435 + Sama_0548 0.75 +0.4 675,435 + Sama_0548 0.75 +0.9 675,435 + Sama_0548 0.75 +0.8 675,435 + Sama_0548 0.75 +0.2 675,435 + Sama_0548 0.75 -1.5 675,435 + Sama_0548 0.75 -1.0 675,435 + Sama_0548 0.75 -1.1 675,436 - Sama_0548 0.75 +0.6 675,436 - Sama_0548 0.75 -0.5 675,436 - Sama_0548 0.75 +1.9 675,436 - Sama_0548 0.75 +1.2 675,436 - Sama_0548 0.75 +1.6 675,436 - Sama_0548 0.75 +0.7 675,436 - Sama_0548 0.75 -0.2 675,436 - Sama_0548 0.75 +0.7 675,436 - Sama_0548 0.75 -0.0 675,439 + Sama_0548 0.76 -1.2 675,439 + Sama_0548 0.76 -1.5 675,439 + Sama_0548 0.76 +0.2 675,439 + Sama_0548 0.76 +0.8 675,439 + Sama_0548 0.76 -0.1 675,439 + Sama_0548 0.76 +0.6 675,439 + Sama_0548 0.76 +0.2 675,439 + Sama_0548 0.76 -0.9 675,439 + Sama_0548 0.76 -0.7 675,440 - Sama_0548 0.76 -0.1 675,440 - Sama_0548 0.76 +0.2 675,440 - Sama_0548 0.76 -1.8 675,440 - Sama_0548 0.76 +0.8 675,440 - Sama_0548 0.76 +1.2 675,440 - Sama_0548 0.76 -0.4 675,508 + Sama_0548 0.87 +0.0 675,508 + Sama_0548 0.87 +0.1 675,509 - Sama_0548 0.87 -1.5 675,543 + +0.3 675,543 + +1.3 675,543 + -1.4 675,543 + +0.4 675,543 + +1.3 675,544 - -0.1 675,544 - +2.1 675,547 + -1.0 675,547 + +1.4 675,547 + -0.2 675,548 - -0.8 675,555 + -1.1 675,556 - -3.3 675,614 + +0.7 675,614 + -1.2 675,615 - -0.3 675,665 + -0.9 675,665 + -1.5 675,688 - -0.1 675,721 + Sama_0549 0.27 +0.0 675,721 + Sama_0549 0.27 -1.6 675,721 + Sama_0549 0.27 -0.9 675,721 + Sama_0549 0.27 -0.3 675,721 + Sama_0549 0.27 -0.2 675,721 + Sama_0549 0.27 -2.2 675,721 + Sama_0549 0.27 -0.9 675,722 - Sama_0549 0.28 -1.1 675,722 - Sama_0549 0.28 +0.3 675,722 - Sama_0549 0.28 -2.5 675,722 - Sama_0549 0.28 -1.4 675,722 - Sama_0549 0.28 -1.1 675,722 - Sama_0549 0.28 +1.8 675,722 - Sama_0549 0.28 +1.2 675,722 - Sama_0549 0.28 -1.4 675,759 - Sama_0549 0.57 -0.6 675,759 - Sama_0549 0.57 -1.1 675,770 + Sama_0549 0.65 -1.2 675,771 - Sama_0549 0.66 -1.0 675,776 + Sama_0549 0.70 +0.1 675,784 + Sama_0549 0.76 -1.0 675,785 - Sama_0549 0.77 -0.4 675,852 + -1.4 675,852 + -0.5 675,853 - -0.3 675,853 - -0.0 675,853 - -0.5 675,890 + -0.8 675,890 + -0.5 675,891 - -1.5 675,907 + -1.4 675,908 - -0.1 675,914 - -0.3 675,914 - -2.2 675,979 + +0.7 675,979 + -0.2 675,979 + -1.9 675,980 - -0.7 676,115 + +0.3 676,115 + +0.9 676,115 + +2.4 676,115 + -0.9 676,115 + +0.2 676,116 - +0.3 676,116 - -0.6 676,116 - -0.6 676,116 - +1.7 676,116 - -0.7 676,179 + +1.4 676,179 + -1.2 676,179 + -0.8 676,179 + +3.3 676,198 - +0.7 676,293 + Sama_0550 0.15 -0.5 676,293 + Sama_0550 0.15 -1.9 676,293 + Sama_0550 0.15 +0.3 676,293 + Sama_0550 0.15 -1.1 676,293 + Sama_0550 0.15 +1.6 676,293 + Sama_0550 0.15 +2.0 676,293 + Sama_0550 0.15 +0.9 676,294 - Sama_0550 0.15 +1.5 676,294 - Sama_0550 0.15 +0.2 676,294 - Sama_0550 0.15 -0.2 676,294 - Sama_0550 0.15 -0.6 676,297 + Sama_0550 0.15 +1.8 676,297 + Sama_0550 0.15 -0.3 676,297 + Sama_0550 0.15 -0.0 676,297 + Sama_0550 0.15 +0.2 676,297 + Sama_0550 0.15 -0.3 676,297 + Sama_0550 0.15 -0.1 676,297 + Sama_0550 0.15 -2.0 676,298 - Sama_0550 0.15 +0.4 676,298 - Sama_0550 0.15 +0.2 676,298 - Sama_0550 0.15 +1.9 676,298 - Sama_0550 0.15 +0.4 676,298 - Sama_0550 0.15 -1.4 676,298 - Sama_0550 0.15 +0.9 676,298 - Sama_0550 0.15 -0.3 676,425 + Sama_0550 0.23 +0.1 676,425 + Sama_0550 0.23 -2.0 676,425 + Sama_0550 0.23 -0.2 676,425 + Sama_0550 0.23 +3.0 676,426 - Sama_0550 0.24 -0.6 676,426 - Sama_0550 0.24 -0.6 676,455 + Sama_0550 0.25 -1.9 676,507 - Sama_0550 0.29 -0.6 676,507 - Sama_0550 0.29 -0.9 676,610 - Sama_0550 0.35 -0.4 676,724 + Sama_0550 0.43 +0.1 676,724 + Sama_0550 0.43 +0.6 676,724 + Sama_0550 0.43 -0.4 676,734 + Sama_0550 0.43 -0.3 676,734 + Sama_0550 0.43 +0.6 676,734 + Sama_0550 0.43 +0.6 676,735 - Sama_0550 0.43 +0.1 676,735 - Sama_0550 0.43 -0.5 676,735 - Sama_0550 0.43 +2.0 676,735 - Sama_0550 0.43 -2.8 676,743 + Sama_0550 0.44 -0.2 676,743 + Sama_0550 0.44 +0.4 676,744 - Sama_0550 0.44 +0.1 676,744 - Sama_0550 0.44 -0.3 676,744 - Sama_0550 0.44 -0.8 676,744 - Sama_0550 0.44 -1.0
Or see this region's nucleotide sequence