Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0504 and Sama_0505 are separated by 133 nucleotides Sama_0505 and Sama_0506 are separated by 71 nucleotides
Sama_0504: Sama_0504 - hypothetical protein (RefSeq), at 617,948 to 619,003
_0504
Sama_0505: Sama_0505 - ATP-dependent protease La (RefSeq), at 619,137 to 619,712
_0505
Sama_0506: Sama_0506 - pseudouridine synthase (RefSeq), at 619,784 to 620,713
_0506
Position (kb) 619
620 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 618.198 kb on - strand, within Sama_0504 at 618.218 kb on + strand, within Sama_0504 at 618.218 kb on + strand, within Sama_0504 at 618.219 kb on - strand, within Sama_0504 at 618.219 kb on - strand, within Sama_0504 at 618.220 kb on + strand, within Sama_0504 at 618.221 kb on - strand, within Sama_0504 at 618.233 kb on + strand, within Sama_0504 at 618.234 kb on - strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.281 kb on - strand, within Sama_0504 at 618.281 kb on - strand, within Sama_0504 at 618.281 kb on - strand, within Sama_0504 at 618.375 kb on + strand, within Sama_0504 at 618.376 kb on - strand, within Sama_0504 at 618.376 kb on - strand, within Sama_0504 at 618.376 kb on - strand, within Sama_0504 at 618.528 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.651 kb on - strand, within Sama_0504 at 618.651 kb on - strand, within Sama_0504 at 618.671 kb on + strand, within Sama_0504 at 618.716 kb on + strand, within Sama_0504 at 618.717 kb on - strand, within Sama_0504 at 618.757 kb on + strand, within Sama_0504 at 618.758 kb on - strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.792 kb on - strand, within Sama_0504 at 618.792 kb on - strand, within Sama_0504 at 618.792 kb on - strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.797 kb on - strand, within Sama_0504 at 618.797 kb on - strand, within Sama_0504 at 618.874 kb on + strand, within Sama_0504 at 618.875 kb on - strand, within Sama_0504 at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.975 kb on + strand at 618.975 kb on + strand at 618.975 kb on + strand at 618.975 kb on + strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.977 kb on - strand at 619.028 kb on + strand at 619.028 kb on + strand at 619.028 kb on + strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.102 kb on + strand at 619.102 kb on + strand at 619.102 kb on + strand at 619.103 kb on - strand at 619.103 kb on - strand at 619.108 kb on + strand at 619.108 kb on + strand at 619.108 kb on + strand at 619.109 kb on - strand at 619.109 kb on - strand at 619.133 kb on + strand at 619.134 kb on - strand at 619.159 kb on + strand at 619.177 kb on + strand at 619.177 kb on + strand at 619.177 kb on + strand at 619.178 kb on - strand at 619.225 kb on - strand, within Sama_0505 at 619.225 kb on - strand, within Sama_0505 at 619.309 kb on - strand, within Sama_0505 at 619.370 kb on + strand, within Sama_0505 at 619.370 kb on + strand, within Sama_0505 at 619.370 kb on + strand, within Sama_0505 at 619.371 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.524 kb on + strand, within Sama_0505 at 619.524 kb on + strand, within Sama_0505 at 619.554 kb on + strand, within Sama_0505 at 619.620 kb on + strand, within Sama_0505 at 619.620 kb on + strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.646 kb on + strand, within Sama_0505 at 619.646 kb on + strand, within Sama_0505 at 619.646 kb on + strand, within Sama_0505 at 619.647 kb on - strand, within Sama_0505 at 619.647 kb on - strand, within Sama_0505 at 619.647 kb on - strand, within Sama_0505 at 619.691 kb on + strand at 619.691 kb on + strand at 619.691 kb on + strand at 619.692 kb on - strand at 619.694 kb on + strand at 619.694 kb on + strand at 619.694 kb on + strand at 619.694 kb on + strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.738 kb on + strand at 619.751 kb on + strand at 619.752 kb on - strand at 619.752 kb on - strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.864 kb on - strand at 619.864 kb on - strand at 619.895 kb on - strand, within Sama_0506 at 620.000 kb on + strand, within Sama_0506 at 620.001 kb on - strand, within Sama_0506 at 620.001 kb on - strand, within Sama_0506 at 620.001 kb on - strand, within Sama_0506 at 620.003 kb on + strand, within Sama_0506 at 620.003 kb on + strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.007 kb on - strand, within Sama_0506 at 620.007 kb on - strand, within Sama_0506 at 620.052 kb on + strand, within Sama_0506 at 620.053 kb on - strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.120 kb on - strand, within Sama_0506 at 620.120 kb on - strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.219 kb on - strand, within Sama_0506 at 620.255 kb on + strand, within Sama_0506 at 620.255 kb on + strand, within Sama_0506 at 620.255 kb on + strand, within Sama_0506 at 620.256 kb on - strand, within Sama_0506 at 620.284 kb on - strand, within Sama_0506 at 620.374 kb on + strand, within Sama_0506 at 620.418 kb on + strand, within Sama_0506 at 620.418 kb on + strand, within Sama_0506 at 620.418 kb on + strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.484 kb on + strand, within Sama_0506 at 620.608 kb on + strand, within Sama_0506 at 620.609 kb on - strand, within Sama_0506 at 620.609 kb on - strand, within Sama_0506 at 620.619 kb on + strand, within Sama_0506 at 620.620 kb on - strand, within Sama_0506 at 620.647 kb on + strand at 620.648 kb on - strand at 620.711 kb on + strand at 620.711 kb on + strand at 620.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 618,198 - Sama_0504 0.24 +2.9 618,218 + Sama_0504 0.26 -1.5 618,218 + Sama_0504 0.26 -1.4 618,219 - Sama_0504 0.26 +0.8 618,219 - Sama_0504 0.26 +0.1 618,220 + Sama_0504 0.26 -0.8 618,221 - Sama_0504 0.26 -1.3 618,233 + Sama_0504 0.27 -0.7 618,234 - Sama_0504 0.27 +0.3 618,280 + Sama_0504 0.31 -0.3 618,280 + Sama_0504 0.31 -0.2 618,280 + Sama_0504 0.31 -1.3 618,280 + Sama_0504 0.31 -0.1 618,280 + Sama_0504 0.31 -0.9 618,281 - Sama_0504 0.32 -0.7 618,281 - Sama_0504 0.32 -1.5 618,281 - Sama_0504 0.32 +0.2 618,375 + Sama_0504 0.40 -0.6 618,376 - Sama_0504 0.41 +0.7 618,376 - Sama_0504 0.41 +2.6 618,376 - Sama_0504 0.41 -0.7 618,528 + Sama_0504 0.55 +0.5 618,650 + Sama_0504 0.66 -1.9 618,650 + Sama_0504 0.66 +2.2 618,650 + Sama_0504 0.66 -0.3 618,650 + Sama_0504 0.66 -0.3 618,650 + Sama_0504 0.66 -1.4 618,651 - Sama_0504 0.67 -0.2 618,651 - Sama_0504 0.67 +0.2 618,671 + Sama_0504 0.68 +1.8 618,716 + Sama_0504 0.73 +0.4 618,717 - Sama_0504 0.73 +0.0 618,757 + Sama_0504 0.77 -0.4 618,758 - Sama_0504 0.77 +0.3 618,791 + Sama_0504 0.80 -1.8 618,791 + Sama_0504 0.80 -0.8 618,791 + Sama_0504 0.80 +2.1 618,791 + Sama_0504 0.80 +2.4 618,792 - Sama_0504 0.80 -0.6 618,792 - Sama_0504 0.80 +1.0 618,792 - Sama_0504 0.80 -0.5 618,796 + Sama_0504 0.80 -1.3 618,796 + Sama_0504 0.80 +0.4 618,796 + Sama_0504 0.80 -0.1 618,796 + Sama_0504 0.80 -0.8 618,797 - Sama_0504 0.80 +0.4 618,797 - Sama_0504 0.80 +0.0 618,874 + Sama_0504 0.88 -1.8 618,875 - Sama_0504 0.88 -1.3 618,973 + +2.0 618,973 + +0.4 618,973 + -1.0 618,973 + -0.9 618,973 + -1.3 618,973 + -1.9 618,973 + +0.6 618,973 + +1.5 618,973 + -0.2 618,973 + +0.2 618,973 + +0.4 618,973 + +0.1 618,973 + -0.4 618,973 + -0.8 618,973 + +0.6 618,973 + +1.1 618,973 + +0.1 618,973 + -1.4 618,973 + -1.3 618,973 + -0.8 618,974 - -0.7 618,974 - +1.1 618,974 - -0.7 618,974 - -0.6 618,974 - -0.1 618,974 - -0.6 618,974 - +3.6 618,974 - +0.2 618,974 - -0.6 618,974 - +1.6 618,974 - -0.7 618,974 - -0.8 618,974 - -1.4 618,974 - +0.4 618,974 - +3.8 618,974 - -0.2 618,974 - -0.1 618,974 - +0.8 618,974 - -0.6 618,974 - -0.1 618,974 - +0.3 618,974 - +1.4 618,974 - -0.4 618,974 - -1.9 618,975 + +0.7 618,975 + +1.6 618,975 + -0.7 618,975 + +1.1 618,976 - -0.4 618,976 - -0.2 618,976 - -0.6 618,976 - -0.7 618,976 - -0.5 618,976 - -0.1 618,976 - +0.9 618,977 - -1.4 619,028 + -0.4 619,028 + -1.5 619,028 + -0.2 619,029 - -1.0 619,029 - -1.7 619,029 - -1.4 619,029 - -0.4 619,029 - -1.0 619,102 + +1.6 619,102 + +0.6 619,102 + -0.0 619,103 - -0.6 619,103 - -0.7 619,108 + -0.6 619,108 + -1.9 619,108 + +0.2 619,109 - -0.6 619,109 - +3.1 619,133 + -0.3 619,134 - -1.1 619,159 + +0.4 619,177 + +0.1 619,177 + +0.3 619,177 + -0.3 619,178 - -0.6 619,225 - Sama_0505 0.15 +2.3 619,225 - Sama_0505 0.15 +0.1 619,309 - Sama_0505 0.30 -0.4 619,370 + Sama_0505 0.40 -1.1 619,370 + Sama_0505 0.40 -0.0 619,370 + Sama_0505 0.40 -0.4 619,371 - Sama_0505 0.41 +0.3 619,422 - Sama_0505 0.49 +0.2 619,422 - Sama_0505 0.49 -0.5 619,422 - Sama_0505 0.49 -0.5 619,422 - Sama_0505 0.49 -2.3 619,524 + Sama_0505 0.67 -1.7 619,524 + Sama_0505 0.67 -0.1 619,554 + Sama_0505 0.72 +1.8 619,620 + Sama_0505 0.84 -0.3 619,620 + Sama_0505 0.84 +0.4 619,621 - Sama_0505 0.84 -1.1 619,621 - Sama_0505 0.84 +0.1 619,621 - Sama_0505 0.84 +0.3 619,621 - Sama_0505 0.84 -1.9 619,621 - Sama_0505 0.84 -0.4 619,621 - Sama_0505 0.84 +0.3 619,646 + Sama_0505 0.88 -0.3 619,646 + Sama_0505 0.88 -0.6 619,646 + Sama_0505 0.88 +1.8 619,647 - Sama_0505 0.89 -1.7 619,647 - Sama_0505 0.89 -1.2 619,647 - Sama_0505 0.89 +1.1 619,691 + -0.8 619,691 + -0.7 619,691 + -0.4 619,692 - -0.6 619,694 + +0.5 619,694 + -1.1 619,694 + -1.4 619,694 + -1.5 619,695 - -1.0 619,695 - -0.5 619,695 - +1.6 619,695 - +0.9 619,695 - -0.8 619,695 - +0.5 619,738 + -1.6 619,751 + +2.1 619,752 - -0.5 619,752 - +0.5 619,826 + +0.2 619,826 + +1.1 619,826 + -0.3 619,826 + +2.1 619,826 + +1.1 619,826 + +0.4 619,826 + +1.3 619,826 + -0.2 619,826 + +0.6 619,826 + +1.4 619,826 + +0.2 619,826 + +2.6 619,826 + +1.0 619,827 - -0.4 619,827 - +0.6 619,827 - +0.2 619,827 - -0.4 619,827 - +0.7 619,827 - +0.5 619,827 - +0.3 619,827 - +0.2 619,827 - +1.4 619,864 - +1.2 619,864 - +0.8 619,895 - Sama_0506 0.12 +0.3 620,000 + Sama_0506 0.23 +1.7 620,001 - Sama_0506 0.23 -0.0 620,001 - Sama_0506 0.23 +0.3 620,001 - Sama_0506 0.23 +1.1 620,003 + Sama_0506 0.24 +1.1 620,003 + Sama_0506 0.24 +0.7 620,004 - Sama_0506 0.24 -0.7 620,004 - Sama_0506 0.24 +0.6 620,004 - Sama_0506 0.24 +0.7 620,004 - Sama_0506 0.24 +0.8 620,004 - Sama_0506 0.24 +0.5 620,007 - Sama_0506 0.24 +0.5 620,007 - Sama_0506 0.24 +0.6 620,052 + Sama_0506 0.29 +0.4 620,053 - Sama_0506 0.29 +1.2 620,071 + Sama_0506 0.31 +0.6 620,071 + Sama_0506 0.31 -0.1 620,071 + Sama_0506 0.31 -2.0 620,071 + Sama_0506 0.31 +0.7 620,071 + Sama_0506 0.31 +0.4 620,071 + Sama_0506 0.31 -0.3 620,071 + Sama_0506 0.31 +0.1 620,071 + Sama_0506 0.31 -0.9 620,071 + Sama_0506 0.31 +0.6 620,071 + Sama_0506 0.31 +0.4 620,072 - Sama_0506 0.31 +0.7 620,072 - Sama_0506 0.31 +2.7 620,072 - Sama_0506 0.31 -0.4 620,072 - Sama_0506 0.31 +0.6 620,072 - Sama_0506 0.31 +0.0 620,072 - Sama_0506 0.31 +1.5 620,072 - Sama_0506 0.31 +0.2 620,072 - Sama_0506 0.31 +0.0 620,072 - Sama_0506 0.31 -0.4 620,072 - Sama_0506 0.31 +0.5 620,072 - Sama_0506 0.31 +2.6 620,072 - Sama_0506 0.31 -0.6 620,072 - Sama_0506 0.31 +0.1 620,072 - Sama_0506 0.31 +0.3 620,072 - Sama_0506 0.31 +2.3 620,072 - Sama_0506 0.31 -0.3 620,072 - Sama_0506 0.31 +0.5 620,120 - Sama_0506 0.36 +0.7 620,120 - Sama_0506 0.36 +0.8 620,123 + Sama_0506 0.36 +0.9 620,123 + Sama_0506 0.36 +0.1 620,123 + Sama_0506 0.36 +2.6 620,123 + Sama_0506 0.36 -2.6 620,123 + Sama_0506 0.36 -0.1 620,123 + Sama_0506 0.36 +2.9 620,123 + Sama_0506 0.36 +0.6 620,123 + Sama_0506 0.36 +1.3 620,124 - Sama_0506 0.37 -1.0 620,124 - Sama_0506 0.37 +1.1 620,124 - Sama_0506 0.37 +0.6 620,124 - Sama_0506 0.37 +1.5 620,124 - Sama_0506 0.37 -0.3 620,124 - Sama_0506 0.37 +1.2 620,124 - Sama_0506 0.37 +0.3 620,124 - Sama_0506 0.37 +0.4 620,219 - Sama_0506 0.47 +0.9 620,255 + Sama_0506 0.51 +1.9 620,255 + Sama_0506 0.51 +2.1 620,255 + Sama_0506 0.51 +1.6 620,256 - Sama_0506 0.51 -0.5 620,284 - Sama_0506 0.54 -0.3 620,374 + Sama_0506 0.63 +0.9 620,418 + Sama_0506 0.68 +2.9 620,418 + Sama_0506 0.68 +1.1 620,418 + Sama_0506 0.68 -0.4 620,419 - Sama_0506 0.68 +2.1 620,419 - Sama_0506 0.68 +1.5 620,419 - Sama_0506 0.68 +2.1 620,419 - Sama_0506 0.68 -1.0 620,419 - Sama_0506 0.68 +0.6 620,484 + Sama_0506 0.75 +1.0 620,608 + Sama_0506 0.89 +2.1 620,609 - Sama_0506 0.89 -0.4 620,609 - Sama_0506 0.89 +0.5 620,619 + Sama_0506 0.90 +0.1 620,620 - Sama_0506 0.90 +0.8 620,647 + +1.0 620,648 - +2.1 620,711 + -1.5 620,711 + -1.7 620,712 - +0.4
Or see this region's nucleotide sequence