Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2929 and Dshi_2930 overlap by 1 nucleotides Dshi_2930 and Dshi_2931 are separated by 134 nucleotides Dshi_2931 and Dshi_2932 are separated by 9 nucleotides Dshi_2932 and Dshi_2933 are separated by 106 nucleotides Dshi_2933 and Dshi_2934 are separated by 9 nucleotides
Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763
_2929
Dshi_2930: Dshi_2930 - DSBA oxidoreductase (RefSeq), at 3,087,763 to 3,088,362
_2930
Dshi_2931: Dshi_2931 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,088,497 to 3,089,519
_2931
Dshi_2932: Dshi_2932 - hypothetical protein (RefSeq), at 3,089,529 to 3,089,879
_2932
Dshi_2933: Dshi_2933 - ATP synthase F1, epsilon subunit (RefSeq), at 3,089,986 to 3,090,381
_2933
Dshi_2934: Dshi_2934 - ATP synthase F1, beta subunit (RefSeq), at 3,090,391 to 3,091,815
_2934
Position (kb)
3088
3089
3090 Strain fitness (log2 ratio)
-2
-1
0
1 at 3087.669 kb on + strand, within Dshi_2929 at 3087.731 kb on + strand at 3087.786 kb on + strand at 3087.838 kb on - strand, within Dshi_2930 at 3087.900 kb on + strand, within Dshi_2930 at 3087.988 kb on - strand, within Dshi_2930 at 3088.107 kb on + strand, within Dshi_2930 at 3088.115 kb on - strand, within Dshi_2930 at 3088.126 kb on - strand, within Dshi_2930 at 3088.182 kb on - strand, within Dshi_2930 at 3089.535 kb on - strand at 3089.576 kb on + strand, within Dshi_2932 at 3089.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,087,669 + Dshi_2929 0.89 -0.3 3,087,731 + -1.1 3,087,786 + -0.7 3,087,838 - Dshi_2930 0.12 -0.8 3,087,900 + Dshi_2930 0.23 -2.4 3,087,988 - Dshi_2930 0.38 +0.6 3,088,107 + Dshi_2930 0.57 +0.2 3,088,115 - Dshi_2930 0.59 +0.5 3,088,126 - Dshi_2930 0.60 +0.3 3,088,182 - Dshi_2930 0.70 -0.1 3,089,535 - -0.5 3,089,576 + Dshi_2932 0.13 -1.0 3,089,899 - +0.0
Or see this region's nucleotide sequence